View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18356_low_14 (Length: 285)
Name: NF18356_low_14
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18356_low_14 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 110 - 285
Target Start/End: Original strand, 17394005 - 17394180
Alignment:
| Q |
110 |
attgttattttcctccacgacacttaccttcttcttttcacacattgatgatagttcaagaattttgaacctgaatacggtattttcaatatgtgtaaaa |
209 |
Q |
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| T |
17394005 |
attgttattttcctccacgacacttaccttcttcttttcacacatcgatgatagttcaagaattttgaacctgaatacggtattttcaatatgtgtaaaa |
17394104 |
T |
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| Q |
210 |
acaaggaaatcatcctcctctaaagaattttcctctctaaattgcttccagccatcatcaaaataaagctcatcgc |
285 |
Q |
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| T |
17394105 |
acaaggaaatcatcctcctctaaagaattttcctctctaaattgcttccagccaccgtcaaaataaagctcatcgc |
17394180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 17454792 - 17454660
Alignment:
| Q |
142 |
tcttttcacacattgatgatagttcaagaattttgaacctgaatacggtattttcaatatgtgtaaaaacaaggaaatcatcctcctctaaagaattttc |
241 |
Q |
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| T |
17454792 |
tcttttcacacattgatgatagttcaagaattttgaatttgaatacattgttttcaatatgagtaaaaacaaggaagtcattctccactaaacaattttc |
17454693 |
T |
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| Q |
242 |
ctctctaaattgcttccagccatcatcaaaata |
274 |
Q |
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| T |
17454692 |
ttgtctaaatttcttccagccatcatcaaaata |
17454660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 17461036 - 17460874
Alignment:
| Q |
115 |
tattttcctccacgacacttaccttcttcttttcacacattgatgatagttcaagaattttgaacctgaatacggtattttcaatatgtgtaaaaacaag |
214 |
Q |
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| T |
17461036 |
tattttcctcctcgtccattaccttcatcttttgacacattgatgatagttcaaggattttgaacttgaatacattgttttcaatatgcgtgaaaacaag |
17460937 |
T |
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| Q |
215 |
gaaatcatcctcctctaaagaattttcctctctaaattgcttccagccatcatcaaaataaag |
277 |
Q |
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| T |
17460936 |
gaagtcattgtcctctaaagaattttcttctctgaatagtttccaaccatcatcaaaataaag |
17460874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 40235611 - 40235757
Alignment:
| Q |
133 |
ttaccttcttcttttcacacattgatgatagttcaagaattttgaacctgaatacggtattttcaatatgtgtaaaaacaaggaaatcatcctcctctaa |
232 |
Q |
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| T |
40235611 |
ttaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaatatgtctgaaaacaaggaagtcattgtcctctaa |
40235710 |
T |
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| Q |
233 |
agaattttcctctctaaattgcttccagccatcatcaaaataaagct |
279 |
Q |
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| T |
40235711 |
agaattttcttctctgaatagtttccaaccatcatcaaaataaagct |
40235757 |
T |
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