View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18356_low_15 (Length: 266)
Name: NF18356_low_15
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18356_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 17394167 - 17394413
Alignment:
| Q |
1 |
ataaagctcatcgccaataggacgagctttgacatgccaatctcttcctcttcgacctcttaggataaaatcctttagtaccttcctttttgaacgcatc |
100 |
Q |
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| T |
17394167 |
ataaagctcatcgccaataagacgagctttgacatgccaatctcttcctctacgatctcttaggataaaatcctttattaccttcctttttgaacgcatc |
17394266 |
T |
|
| Q |
101 |
aagttcacaaaagcatttgggatacgctgcaatagattnnnnnnnnnnnnnnttagtagttaataactactacatcacaagttattttcaatacacttaa |
200 |
Q |
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| T |
17394267 |
aagttcacaaaagcatttgggatacgctgcaatagatttaaaaaaataaaaattagtagttaataactactacatcacaagttattttcaatacacttaa |
17394366 |
T |
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| Q |
201 |
tagactctgaggagataacttaaggaataaaaaacattagaggaagc |
247 |
Q |
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| T |
17394367 |
taaactctgaggagatcacttaaggaagaaaaaacatcagaggaagc |
17394413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 17454649 - 17454528
Alignment:
| Q |
14 |
ccaataggacgagctttgacatgccaatctcttcctcttcgacctcttaggataaaatcctttagtaccttcctttttgaacgcatcaagttcacaaaag |
113 |
Q |
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| T |
17454649 |
ccaatacgacgcgctttgacataccaatctcttcttctacgatctcttaggataaaatcctttattacccttctttttgaatgcaccaagttcataaaag |
17454550 |
T |
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| Q |
114 |
catttgggatacgctgcaatag |
135 |
Q |
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| T |
17454549 |
catttgggataagctgcaatag |
17454528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 17460853 - 17460750
Alignment:
| Q |
27 |
ctttgacatgccaatctcttcctcttcgacctcttaggataaaatcctttagtaccttcctttttgaacgcatcaagttcacaaaagcatttgggatacg |
126 |
Q |
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|||||||||||||||| |||||||| || ||||||||||||||||||| | || | | ||||||| |||||| ||||||||||| |||||||| | |
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| T |
17460853 |
ctttgacatgccaatcacttcctctatgatctcttaggataaaatccttcaatagcctttgttttgaaatcatcaatttcacaaaagccgttgggataag |
17460754 |
T |
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| Q |
127 |
ctgc |
130 |
Q |
| |
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|||| |
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| T |
17460753 |
ctgc |
17460750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 40235763 - 40235883
Alignment:
| Q |
14 |
ccaataggacgagctttgacatgccaatctcttcctcttcgacctcttaggataaaatcctttagtaccttcctttttgaacgcatcaagttcacaaaag |
113 |
Q |
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||||||| ||| |||||||||||||||||| ||||||| || | ||||||||||||| || | |||| | ||| ||| |||| | |||||||||| |
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| T |
40235763 |
ccaatagaacgtgctttgacatgccaatctgttcctctatgatcccttaggataaaatatttcaataccctttgtttcgaaagcatgagcttcacaaaag |
40235862 |
T |
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| Q |
114 |
catttgggatacgctgcaata |
134 |
Q |
| |
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|| |||||||| ||||||||| |
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| T |
40235863 |
caattgggataagctgcaata |
40235883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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