View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18356_low_16 (Length: 258)

Name: NF18356_low_16
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18356_low_16
NF18356_low_16
[»] chr2 (11 HSPs)
chr2 (14-234)||(30384981-30385201)
chr2 (14-234)||(30395733-30395953)
chr2 (27-235)||(30476505-30476713)
chr2 (14-220)||(30484698-30484904)
chr2 (27-234)||(23768601-23768808)
chr2 (27-234)||(23783274-23783481)
chr2 (14-220)||(8378905-8379111)
chr2 (27-237)||(30437551-30437761)
chr2 (41-235)||(30425265-30425459)
chr2 (27-235)||(30469364-30469572)
chr2 (27-235)||(30431298-30431506)
[»] chr5 (1 HSPs)
chr5 (14-232)||(41626754-41626972)
[»] chr8 (4 HSPs)
chr8 (89-217)||(15858526-15858654)
chr8 (89-217)||(15865594-15865722)
chr8 (89-217)||(15851626-15851754)
chr8 (27-217)||(15844329-15844519)
[»] chr4 (1 HSPs)
chr4 (89-193)||(11019459-11019563)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 30385201 - 30384981
Alignment:
Q  14 agcataggtcggtgaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30385201 agcataggtcggtgaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcga 30385102  T
Q  114 ggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcacccc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30385101 ggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccaaaaaatctttcaggattgaacattttagcatcatcacccc 30385002  T
Q  214 atagttcgcagtcatggtgaa 234  Q
    |||||||||||||||||||||    
T  30385001 atagttcgcagtcatggtgaa 30384981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 30395953 - 30395733
Alignment:
Q  14 agcataggtcggtgaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcga 113  Q
    ||||||||| |  |||||||||||||| |||||||||||||||| || || ||||||  ||||||||||||| |||||||||||||||||||||||||      
T  30395953 agcataggttgaggaaagttcaaatgaaaaatgttgcaaaatcattgacaatgccatctttgcttccattagggaaaagttttgtccaatgcaaattctt 30395854  T
Q  114 ggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcacccc 213  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  30395853 ggaccccatccaaatggaaaaaatgaaactctaccatttgttgctttagaaattcctccggaaaatctctcaggattgaacattttagcatcatcgcccc 30395754  T
Q  214 atagttcgcagtcatggtgaa 234  Q
    |||||| ||||||||| ||||    
T  30395753 atagtttgcagtcatgatgaa 30395733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 235
Target Start/End: Complemental strand, 30476713 - 30476505
Alignment:
Q  27 gaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaa 126  Q
    ||||||||||||||||| | ||  ||||||| || |||||||||  |||||||||  |  ||||| |||||||||||||||||||  ||||||| |||||    
T  30476713 gaaagttcaaatgagaatttttttaaaatcattgccattgccatctttgcttccaacatggaaaaattttgtccaatgcaaattcttggaccccctccaa 30476614  T
Q  127 atggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtc 226  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||||||||||| ||||    
T  30476613 atggaaaaaatgaaaatctcccatttgttgctttggaaattcctccagaaaatctctcaggattgaacaccttagcatcttcaccccatagttcggagtc 30476514  T
Q  227 atggtgaac 235  Q
    |||||||||    
T  30476513 atggtgaac 30476505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 30484904 - 30484698
Alignment:
Q  14 agcataggtcggtgaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcga 113  Q
    ||||||||| || |||||||||||||||||||| |||||||||||||| ||||||||  |||||||||  |  ||||||||||||||||| ||||||| |    
T  30484904 agcataggttggagaaagttcaaatgagaaatgctgcaaaatcaatgttattgccatctttgcttccaacatggaaaagttttgtccaatacaaattcta 30484805  T
Q  114 ggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcacccc 213  Q
    ||||||| |||||||||||||||||||  ||| |||||||||||||| |||| |||| | | |||||| |||||||||||||  |||||||| |||||||    
T  30484804 ggaccccctccaaatggaaaaaatgaatttctaccatttgttgcttttgaaactccttctgcaaatctctcaggattgaacaccttagcatcttcacccc 30484705  T
Q  214 atagttc 220  Q
    |||||||    
T  30484704 atagttc 30484698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 23768808 - 23768601
Alignment:
Q  27 gaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaa 126  Q
    |||||||||||||| ||||  || |||||||||| |||||||||  ||||||||| |||||||||| | ||||||||||| |||| ||||||   |||||    
T  23768808 gaaagttcaaatgaaaaattctgtaaaatcaatgccattgccatctttgcttccaatagagaaaaggtctgtccaatgcagattctaggacctgctccaa 23768709  T
Q  127 atggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtc 226  Q
    | |||||| |||||| ||| || |||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| || ||    
T  23768708 acggaaaatatgaaaatctaccgtttgttgctttggaaattccaccagaaaatctctcaggattgaaaatcttagcatcatcaccccatagttcacaatc 23768609  T
Q  227 atggtgaa 234  Q
    ||||||||    
T  23768608 atggtgaa 23768601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 23783274 - 23783481
Alignment:
Q  27 gaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaa 126  Q
    |||||||||||||| ||||  |  |||||||||| |||||||||  |||||||||  || |||||||||||||||||||| |||| |||||||  |||||    
T  23783274 gaaagttcaaatgaaaaattctttaaaatcaatgccattgccatctttgcttccaacagggaaaagttttgtccaatgcagattctaggacccgctccaa 23783373  T
Q  127 atggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtc 226  Q
    | |||||| |||||| ||| || |||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| || ||    
T  23783374 acggaaaatatgaaaatctaccgtttgttgctttggaaattccaccagaaaatctctcaggattgaaaatcttagcatcatcaccccatagttcacaatc 23783473  T
Q  227 atggtgaa 234  Q
    ||||||||    
T  23783474 atggtgaa 23783481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 8378905 - 8379111
Alignment:
Q  14 agcataggtcggtgaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcga 113  Q
    ||||||||| || |||||||||||  |||||| ||| ||||||| || || ||||||  ||||||||| ||| |||||||||||||| ||||||| || |    
T  8378905 agcataggttggagaaagttcaaaatagaaattttgtaaaatcattgacactgccatctttgcttccaatagggaaaagttttgtcccatgcaaactcta 8379004  T
Q  114 ggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcacccc 213  Q
    ||||||| ||||||||||||| ||  || ||| |||||||||||||||||||||||| ||| |||||| |||||||||||||| || |||||||||||||    
T  8379005 ggaccccctccaaatggaaaatatataaatctaccatttgttgctttggaaattccttcagcaaatctctcaggattgaacatctttgcatcatcacccc 8379104  T
Q  214 atagttc 220  Q
    |||||||    
T  8379105 atagttc 8379111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 30437761 - 30437551
Alignment:
Q  27 gaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaa 126  Q
    |||||||| ||||||||| |||| ||||||| ||  || |||||  |||||||||  | ||||||||| |||||||||||||||| |||||||| |||||    
T  30437761 gaaagttcgaatgagaaacgttgtaaaatcattgctatcgccatctttgcttccaacatagaaaagttctgtccaatgcaaattctaggaccccctccaa 30437662  T
Q  127 atggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtc 226  Q
    |||||| |||||||  ||||||||||||||||||  |||  ||| |||||||||| |||||||||||||  |||||||| ||||||||||||||| ||||    
T  30437661 atggaacaaatgaatttcttccatttgttgctttcaaaacaccttcagaaaatctctcaggattgaacaccttagcatcgtcaccccatagttcggagtc 30437562  T
Q  227 atggtgaacta 237  Q
    |||||||||||    
T  30437561 atggtgaacta 30437551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 30425459 - 30425265
Alignment:
Q  41 gaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaa 140  Q
    |||| |||| ||||||| ||  ||||||||  |||||||||  | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  30425459 gaaacgttgtaaaatcattgctattgccatctttgcttccaacatagaaaagttttgtccaatgcaaattctaggaccccctccaaatggaaaaaatgaa 30425360  T
Q  141 actcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcatggtgaac 235  Q
      ||||||||||||||||||  |||  ||| | |||||||| || ||||||||||  |||||||||||||||||||||||   ||||||||||||    
T  30425359 tttcttccatttgttgcttttaaaacaccttctgaaaatctctcgggattgaacaccttagcatcatcaccccatagttctatgtcatggtgaac 30425265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 235
Target Start/End: Complemental strand, 30469572 - 30469364
Alignment:
Q  27 gaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaa 126  Q
    |||||||||||||||||| |||| ||||||| ||  ||||||||  |||||||||  |  |||||||| |||||||||||||||| |||||||| | |||    
T  30469572 gaaagttcaaatgagaaacgttgtaaaatcattgctattgccatctttgcttccaacatggaaaagttctgtccaatgcaaattctaggaccccctgcaa 30469473  T
Q  127 atggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtc 226  Q
    ||||||||||||||  ||||||||| ||||||||  |||  ||| |||||||||| || ||||||||||  |||||||| ||||||||||||||   |||    
T  30469472 atggaaaaaatgaatttcttccattggttgcttttaaaacaccttcagaaaatctctcgggattgaacaccttagcatcttcaccccatagttctatgtc 30469373  T
Q  227 atggtgaac 235  Q
    |||||||||    
T  30469372 atggtgaac 30469364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 235
Target Start/End: Complemental strand, 30431506 - 30431298
Alignment:
Q  27 gaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaa 126  Q
    |||||||||||||||||| |||| ||||||| ||  ||||||||  |||||||||  |  ||||||||||||||||| ||||||| |||||||| | |||    
T  30431506 gaaagttcaaatgagaaacgttgtaaaatcattgctattgccatctttgcttccaacatggaaaagttttgtccaattcaaattctaggacccccttcaa 30431407  T
Q  127 atggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtc 226  Q
    |||||| |||||||  ||||||||||||||||||  |||  ||| | |||||||| || ||||||||||  |||||||| ||||||||||||||   |||    
T  30431406 atggaataaatgaatttcttccatttgttgcttttaaaacaccttctgaaaatctctcgggattgaacaccttagcatcttcaccccatagttctatgtc 30431307  T
Q  227 atggtgaac 235  Q
    |||||||||    
T  30431306 atggtgaac 30431298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 41626754 - 41626972
Alignment:
Q  14 agcataggtcggtgaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcga 113  Q
    ||||||||  || ||||||| |||||||||||| || ||||||||||||||||||||  ||||||||| ||||||||||||||| |||||||| || | |    
T  41626754 agcataggctggagaaagttgaaatgagaaatgctgtaaaatcaatgtcattgccatctttgcttccaatagagaaaagttttgcccaatgcagatccta 41626853  T
Q  114 ggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcacccc 213  Q
    |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41626854 ggaccccatccaaatggaaaaaatgaaactctaccgttcgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcacccc 41626953  T
Q  214 atagttcgcagtcatggtg 232  Q
    ||| ||| || ||||||||    
T  41626954 ataattcacaatcatggtg 41626972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 15858526 - 15858654
Alignment:
Q  89 aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcagga 188  Q
    ||||||||||||||  ||||||| ||||||||||||||| || ||| | ||||||  ||| |||||||| || | ||||||| ||| ||| ||||||||     
T  15858526 aaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggt 15858625  T
Q  189 ttgaacattttagcatcatcaccccatag 217  Q
    ||||||   || |||||||||||||||||    
T  15858626 ttgaactcctttgcatcatcaccccatag 15858654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 15865594 - 15865722
Alignment:
Q  89 aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcagga 188  Q
    ||||||||||||||  ||||||| ||||||||||||||| || ||| | |||||| |||| ||||| || || | ||||||| ||| ||| ||||||||     
T  15865594 aaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttttccttttgtagcctttgcaattccttcagcaaacctttcaggt 15865693  T
Q  189 ttgaacattttagcatcatcaccccatag 217  Q
    ||||||   || |||||||||||||||||    
T  15865694 ttgaactcctttgcatcatcaccccatag 15865722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 15851626 - 15851754
Alignment:
Q  89 aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcagga 188  Q
    ||||||||||||||  ||||||| ||||||||||||||| || | | | ||||||   || ||||| || || | ||||||| ||||||| | |||||||    
T  15851626 aaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgtggcctttgcaattccttcagaaaaccgttcagga 15851725  T
Q  189 ttgaacattttagcatcatcaccccatag 217  Q
    |||||| | || |||||||||||||||||    
T  15851726 ttgaacttctttgcatcatcaccccatag 15851754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 15844329 - 15844519
Alignment:
Q  27 gaaagttcaaatgagaaatgttgcaaaatcaatgtcattgccattcttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaa 126  Q
    |||||||||||||||||||  ||||  | |||||  ||||| ||  ||||||| | ||  | ||||||||||||||  ||||||| ||||||||||||||    
T  15844329 gaaagttcaaatgagaaattctgcagcaacaatgatattgctatctttgcttctaataaggtaaagttttgtccaagacaaattctaggaccccatccaa 15844428  T
Q  127 atggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatag 217  Q
    | || ||| | ||||||  ||| |||||||| || | ||||||| ||| ||| ||||| || ||||||   || |||||||| ||||||||    
T  15844429 aggggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcgggtttgaactcctttgcatcatccccccatag 15844519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 11019563 - 11019459
Alignment:
Q  89 aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcagga 188  Q
    ||||||||||||||| |||| ||  |||||||||||||| || ||  | |||||| | ||||||||||| || |||| |||| |||| |||||||| ||     
T  11019563 aaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactccttcagagaatctttctggt 11019464  T
Q  189 ttgaa 193  Q
    |||||    
T  11019463 ttgaa 11019459  T

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