View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18356_low_2 (Length: 470)
Name: NF18356_low_2
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18356_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 43226816 - 43226565
Alignment:
| Q |
13 |
aaggtgtggacggaggtgatgaggtggctgaattttagttttatcacacatcccaatttgtttattcatgctacttgttggatgagtgaggtgcggtcta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226816 |
aaggtgtggacggaggtgatgaggtggctgaattttagttttatcacacatcccaatttgtttattcatgctacttgttggatgagtgaggtgcggtcta |
43226717 |
T |
|
| Q |
113 |
aaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggtttagaagatgagaaatgatcgaattttcaatgagaaggtgtgtggagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || |||||||||||||||||||| |
|
|
| T |
43226716 |
aaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggtttagaagatgagaattgatcgcatatttaatgagaaggtgtgtggagt |
43226617 |
T |
|
| Q |
213 |
tgatgaaatggtggagcaagtcaaggtgattttgtggcattggagcttgagt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226616 |
tgatgaaatggtggagcaagtcaaggtgattttgtggcattggagcttgagt |
43226565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 357 - 470
Target Start/End: Complemental strand, 43226374 - 43226274
Alignment:
| Q |
357 |
ttttcctctgttttgcgcagagctgttattctctcaggaaacactgttctttagaataagtattaagaaaactatgagtgccatgttcggtctttgtttt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226374 |
ttttcctctgttttgcgcagagctgttattctctcataaaacactgttctt-------------aagaaaactatgagtgccatgttcggtctttgtttt |
43226288 |
T |
|
| Q |
457 |
gaataagcggggta |
470 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
43226287 |
gaataagcggggta |
43226274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 43226505 - 43226458
Alignment:
| Q |
252 |
ttggagcttgagtggttggtttacagttgcggcatttggtggtggtgg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226505 |
ttggagcttgagtggttggtttacagttgcggcatttggtggtggtgg |
43226458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 396 - 467
Target Start/End: Complemental strand, 43242116 - 43242045
Alignment:
| Q |
396 |
aacactgttctttagaataagtattaagaaaactatgagtgccatgttcggtctttgttttgaataagcggg |
467 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| |||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
43242116 |
aacattgttctttagaataagtaataagaaaattatggatgtcatgtccggtctttgttttgaataagcggg |
43242045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 15623144 - 15623223
Alignment:
| Q |
87 |
ttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggttt |
166 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||| || ||| | |||||||||| |
|
|
| T |
15623144 |
ttgttggacaagggaggtgtggtctaaaaagcttagacgaggggcgtggttaatttggcatgcggtcatttgggtggttt |
15623223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 15646933 - 15647012
Alignment:
| Q |
87 |
ttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggttt |
166 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||| || ||| | |||||||||| |
|
|
| T |
15646933 |
ttgttggacaagggaggtgtggtctaaaaagcttagacgaggggcgtggttaatttggcatgcggtcatttgggtggttt |
15647012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 16256768 - 16256842
Alignment:
| Q |
168 |
gaagatgagaaatgatcgaattttcaatgagaaggtgtgtggagttgatgaaatggtggagcaagtcaaggtgat |
242 |
Q |
| |
|
|||||||||||||||| | |||| ||| | || || ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
16256768 |
gaagatgagaaatgatagggtttttaataacaaagtttgtggggttgatgaaatggtggatcaagtcaaggtgat |
16256842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 655115 - 655248
Alignment:
| Q |
13 |
aaggtgtggacggaggtgatgaggtggctgaattttagttttatcacacatcccaatttgtttattcatgctacttgttggatgagtgaggtgcggtcta |
112 |
Q |
| |
|
|||||||||| | |||| |||| |||| ||||||||| ||||||||| | ||| || ||| ||||||| || ||||||| || ||||| |||| | |
|
|
| T |
655115 |
aaggtgtggaggaaggtaatgaagtggttgaattttaattttatcacccctccaaacccgttcattcatgttatttgttgggctagggaggtttggtcaa |
655214 |
T |
|
| Q |
113 |
aaaagcttagacgaggggcttggttaatttggca |
146 |
Q |
| |
|
| |||||||| || ||||| |||||||||||||| |
|
|
| T |
655215 |
agaagcttaggcgcggggcgtggttaatttggca |
655248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University