View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18356_low_24 (Length: 216)
Name: NF18356_low_24
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18356_low_24 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 2573064 - 2572862
Alignment:
| Q |
14 |
acctgtgtaaagagcgtggttggggaagtgtgagctttaagtatgaaatctgcaccccaacgaatagcactgcagagataatcaagctggttcgcagaag |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2573064 |
acctgtgtaaagagcgtggttggggaagtgtgagctttaagtatgaaatctgcaccccaacgaatagcactgcggagataatcaagctggttcgcagaag |
2572965 |
T |
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| Q |
114 |
aaatctcactttcatattcaacagcagcccaactcaacaagctcactgtaaatgacatcggccatccaaacttcacattatcacctgcgtcgtagtatcc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572964 |
aaatctcactttcatattcaacagcagcccaactcaacaagctcactgtaaatgacatcggccatccaaacttcacattatcacctgcgtcgtagtatcc |
2572865 |
T |
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| Q |
214 |
tcc |
216 |
Q |
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||| |
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| T |
2572864 |
tcc |
2572862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 2563081 - 2562879
Alignment:
| Q |
14 |
acctgtgtaaagagcgtggttggggaagtgtgagctttaagtatgaaatctgcaccccaacgaatagcactgcagagataatcaagctggttcgcagaag |
113 |
Q |
| |
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|||||||| ||||||||| |||| |||||||||| || ||||||||||| || ||||||||||||||||| || ||||||| ||| |||||| | |||| |
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| T |
2563081 |
acctgtgtgaagagcgtgattggagaagtgtgagattgaagtatgaaatttgtaccccaacgaatagcacggcggagataaccaatctggttaactgaag |
2562982 |
T |
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| Q |
114 |
aaatctcactttcatattcaacagcagcccaactcaacaagctcactgtaaatgacatcggccatccaaacttcacattatcacctgcgtcgtagtatcc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||| || || |||||||| |
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| T |
2562981 |
aaatctcactttcatattcaacagcagcccaactcaataagctgactgtaaatgacattggccatccaaactttacattatcaccagcatcatagtatcc |
2562882 |
T |
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| Q |
214 |
tcc |
216 |
Q |
| |
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||| |
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| T |
2562881 |
tcc |
2562879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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