View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18356_low_5 (Length: 420)
Name: NF18356_low_5
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18356_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 108 - 346
Target Start/End: Complemental strand, 8411241 - 8411001
Alignment:
| Q |
108 |
aaacaatccaaacatgttcctaaaaggtatg--gtgaaagattgtagtaaagtcgtgacatatgatgaccctattattcttaatataacaaggtctaaaa |
205 |
Q |
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| T |
8411241 |
aaacaatccaaacatgtccctaaaaggtatgtggtgaaagattgaagtaaagtcgtgacatatgatgaccctattattcttaatataacaaggtctaaaa |
8411142 |
T |
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| Q |
206 |
aggttgaaactagtgtactggcaggatatgttattaaccttgagaaagagttgtctactagcatttctgttggagcagctcttgtgcaatcaacacagtt |
305 |
Q |
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| T |
8411141 |
aggtagaaactagtgtactggtaggagatgttattaaccttgagaaagagttatctactagcatttatgttggagcagctcttgtgcaatcaacacagtt |
8411042 |
T |
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| Q |
306 |
tgaagatgttcatacctcgacgactgaggaacaaagagaaa |
346 |
Q |
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| T |
8411041 |
tgaagatgttcatacctcgacgaccgaggaacaaagagaaa |
8411001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 8411014 - 8410979
Alignment:
| Q |
369 |
ggaacaaagagaaaaccaacaaagtagtaaatttct |
404 |
Q |
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| T |
8411014 |
ggaacaaagagaaatccaacaaagtagtaaatttct |
8410979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 8411324 - 8411290
Alignment:
| Q |
13 |
aatatttggaggagaaaatccaatttacaaatatc |
47 |
Q |
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| T |
8411324 |
aatatttggagaagaaaatccaatttacaaatatc |
8411290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 317
Target Start/End: Original strand, 20424693 - 20424906
Alignment:
| Q |
106 |
caaaacaatccaaacatgttcctaaaaggtatg--gtgaaagattgtagtaaagtcgtgacatatgatgaccctattattcttaatataacaaggtctaa |
203 |
Q |
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||||||||| |||||||| ||||||| ||||| |||||||| ||| |||||| ||| || |||| || ||||||||| | |||||| |||||| || |
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| T |
20424693 |
caaaacaattcaaacatgaccctaaaaagtatgtagtgaaagaatgtcgtaaaggtgtggcagatgaagatcctattattagtgatataataaggtccaa |
20424792 |
T |
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| Q |
204 |
aaaggttgaaactagtgtactggcaggatatgttattaaccttgagaaagagttgtctactagcatttctgttggagcagctcttgtgcaatcaacacag |
303 |
Q |
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|||| |||||||||| |||| | || || |||||||| ||||| ||||||||||| ||||||| ||||||||| |||||| | |||||||||||||| |
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| T |
20424793 |
ggaggtagaaactagtgcactgataagaaatattattaactttgaggaagagttgtctgctagcatctctgttggaacagctcgtttgcaatcaacacag |
20424892 |
T |
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| Q |
304 |
tttgaagatgttca |
317 |
Q |
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| T |
20424893 |
attgaagatgttca |
20424906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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