View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18356_low_7 (Length: 388)
Name: NF18356_low_7
Description: NF18356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18356_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 374
Target Start/End: Original strand, 4614164 - 4614531
Alignment:
| Q |
10 |
ataatacttatagttttgttaaggacaagtaatttgttgagtttaataggcatgctttgacggtgtaaaaacttttatataccaatcaaatcacgctaaa |
109 |
Q |
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| T |
4614164 |
ataatacttatagttttgttaaggacaagtaatttgttgagattaataggcatgctttgacggtgtaaaa-cttttatataccaatcaaatcacgctaaa |
4614262 |
T |
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| Q |
110 |
tgttatttttagagatatttgaagaactaaccgacaaaattgacataattatgcga--nnnnnnnaagaaataatgatgtgattggtgtaaacatgtttc |
207 |
Q |
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| T |
4614263 |
tgttatttttagagatatttgaagaactaaccgacaaaattgacataattatgcgacttttttttaagaaataatgatgtgattggtgtaaacatgtttc |
4614362 |
T |
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| Q |
208 |
tcattgagtcctctaacgaatacctccttgtcannnnnnnnnnaaattctcaggtaatctttcgattattctccgtttctcttcct---ttgttgttgtt |
304 |
Q |
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| T |
4614363 |
tcattgagtccactaacgaatacctccttctca-tttttttaaaaattctcaggtaatctttcgattattctccgtttctcttcctttgttgttgttgtt |
4614461 |
T |
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| Q |
305 |
gaggtttagggtttatggaacgatttttagttttgatttaggtttctgtcgttactgttagtagtaagtg |
374 |
Q |
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| T |
4614462 |
gtggtttagggtttatggaacgacttttagttttgatttaggtttctgtcgttactgttagtagaaagtg |
4614531 |
T |
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