View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18357_high_1 (Length: 563)

Name: NF18357_high_1
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18357_high_1
NF18357_high_1
[»] chr1 (15 HSPs)
chr1 (167-368)||(30203987-30204189)
chr1 (155-348)||(51499879-51500073)
chr1 (155-294)||(51483042-51483181)
chr1 (172-256)||(51458491-51458575)
chr1 (24-130)||(51482890-51482996)
chr1 (24-130)||(51499730-51499836)
chr1 (436-515)||(37260912-37260991)
chr1 (365-433)||(30203882-30203950)
chr1 (436-519)||(5119026-5119109)
chr1 (487-538)||(10884465-10884516)
chr1 (436-519)||(37259311-37259394)
chr1 (471-516)||(2093846-2093891)
chr1 (467-514)||(35391506-35391553)
chr1 (467-512)||(2094364-2094409)
chr1 (437-530)||(42883738-42883831)
[»] chr5 (18 HSPs)
chr5 (172-367)||(27398531-27398727)
chr5 (172-316)||(43162761-43162905)
chr5 (171-290)||(20866758-20866877)
chr5 (28-107)||(27398420-27398499)
chr5 (44-107)||(20867004-20867067)
chr5 (467-515)||(17644599-17644647)
chr5 (467-563)||(40266539-40266635)
chr5 (448-519)||(1145153-1145224)
chr5 (487-538)||(17344809-17344860)
chr5 (467-517)||(6158940-6158989)
chr5 (437-515)||(7335534-7335612)
chr5 (472-519)||(6158131-6158178)
chr5 (504-563)||(17644532-17644591)
chr5 (430-484)||(3758916-3758970)
chr5 (505-563)||(7164265-7164323)
chr5 (369-435)||(27398799-27398867)
chr5 (467-519)||(11135772-11135824)
chr5 (442-490)||(16879207-16879255)
[»] scaffold0020 (2 HSPs)
scaffold0020 (171-290)||(135502-135621)
scaffold0020 (28-123)||(135732-135830)
[»] chr3 (7 HSPs)
chr3 (235-349)||(36549945-36550061)
chr3 (26-127)||(36549803-36549904)
chr3 (447-538)||(8150180-8150271)
chr3 (467-509)||(53827666-53827708)
chr3 (434-514)||(3539666-3539746)
chr3 (467-519)||(11342921-11342973)
chr3 (467-515)||(54528955-54529003)
[»] chr6 (7 HSPs)
chr6 (436-521)||(806545-806630)
chr6 (434-519)||(7203946-7204031)
chr6 (512-563)||(807134-807185)
chr6 (436-515)||(14430944-14431023)
chr6 (467-509)||(14153385-14153427)
chr6 (467-512)||(23608458-23608503)
chr6 (434-510)||(17436034-17436110)
[»] chr7 (5 HSPs)
chr7 (436-563)||(28139386-28139513)
chr7 (504-563)||(149041-149100)
chr7 (436-514)||(26009369-26009447)
chr7 (433-517)||(19931485-19931569)
chr7 (467-509)||(48221703-48221745)
[»] chr4 (7 HSPs)
chr4 (447-510)||(38676950-38677013)
chr4 (436-510)||(36217870-36217944)
chr4 (436-528)||(54208180-54208272)
chr4 (467-510)||(24972421-24972464)
chr4 (487-558)||(37999482-37999553)
chr4 (478-519)||(27992299-27992340)
chr4 (467-519)||(27992146-27992198)
[»] chr2 (2 HSPs)
chr2 (435-538)||(28360025-28360127)
chr2 (434-481)||(13329610-13329657)
[»] scaffold0262 (1 HSPs)
scaffold0262 (436-519)||(8384-8467)
[»] chr8 (4 HSPs)
chr8 (435-558)||(27235476-27235599)
chr8 (467-524)||(24899056-24899113)
chr8 (436-537)||(1349196-1349297)
chr8 (428-509)||(33220792-33220873)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 167 - 368
Target Start/End: Complemental strand, 30204189 - 30203987
Alignment:
Q  167 attctttagacggcgctctctgggatatttttcggagagaggatgtacctaaattggaggaatatttcaagaagcatttcagagagttcaagcatgtcca 266  Q
    |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| |    
T  30204189 attccttagatggtgctctctgggatatttttcggagagaggatgtacctaaattggaagaatatttaaagaagcatttcagagagttcaggcatgtcta 30204090  T
Q  267 ctgctgtcctttaatgtaggtaaaattagttaagataattttctattatccgttgggatgcctc-ttttaacttgagtcattaactaaactttgttgcta 365  Q
     |||| |||||||| | |||||||||| |||||||||||||||||||| | |||||||| || | ||||||||||| |||||||||||||||||||||||    
T  30204089 ttgctctcctttaaagcaggtaaaatttgttaagataattttctattagctgttgggattccccattttaacttgattcattaactaaactttgttgcta 30203990  T
Q  366 cca 368  Q
    |||    
T  30203989 cca 30203987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 155 - 348
Target Start/End: Original strand, 51499879 - 51500073
Alignment:
Q  155 aaaatgggggtgattctttagacggcgctctctgggatatttttcggagagaggatgtacctaaattggaggaatatttcaagaagcatttcagagagtt 254  Q
    ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  51499879 aaaataggggcgattctttagacggtgctctctgggatatttttcggagagaggatgttcctaagttggaggaatatttaaagaagcatttcagagagtt 51499978  T
Q  255 caagcatgtccactgctgtcctttaatgtaggtaaaattagttaagataattttctattatccgttgggatgcctc-ttttaacttgagtcatta 348  Q
    || ||||||||||| || |||||||| | |||||||||||||| |||||||||| |||| | || ||| ||||| | ||||||||||||||||||    
T  51499979 caggcatgtccactcctctcctttaaagcaggtaaaattagtttagataattttatatttttcgctggaatgcccctttttaacttgagtcatta 51500073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 155 - 294
Target Start/End: Original strand, 51483042 - 51483181
Alignment:
Q  155 aaaatgggggtgattctttagacggcgctctctgggatatttttcggagagaggatgtacctaaattggaggaatatttcaagaagcatttcagagagtt 254  Q
    |||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  51483042 aaaatgggggtgattctttagatggtgctctttgggatatttttcggagagaggatgtacctgaattggaggaatatttaaagaagcatttcaaagagtt 51483141  T
Q  255 caagcatgtccactgctgtcctttaatgtaggtaaaatta 294  Q
    || ||||||||| |||| |||||||| | |||||||||||    
T  51483142 caggcatgtccattgctctcctttaaagcaggtaaaatta 51483181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 51458491 - 51458575
Alignment:
Q  172 ttagacggcgctctctgggatatttttcggagagaggatgtacctaaattggaggaatatttcaagaagcatttcagagagttca 256  Q
    ||||| || ||||||||||||||||||||||||||||||||||| |||||| |||||||| |  |||||||||||||||||||||    
T  51458491 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttca 51458575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 51482890 - 51482996
Alignment:
Q  24 tgccattaagaaactgacgcaaaagcaccttgagcaagacagaagggagttacatgctcataatcaggatggagagaccaatgtcgacgtgcttggtaat 123  Q
    ||||||| |||||||||| ||||||||||||||||||||||  |||||| |||||| | ||||||| |||||||||||||| || ||| || ||| ||||    
T  51482890 tgccattgagaaactgacacaaaagcaccttgagcaagacaagagggagctacatggtgataatcaagatggagagaccaacgttgacatgtttgataat 51482989  T
Q  124 tcatctt 130  Q
    |||||||    
T  51482990 tcatctt 51482996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 51499730 - 51499836
Alignment:
Q  24 tgccattaagaaactgacgcaaaagcaccttgagcaagacagaagggagttacatgctcataatcaggatggagagaccaatgtcgacgtgcttggtaat 123  Q
    ||||||||||||| ||||  |||||||||||||||||||||  |||||| |||||| | ||||||||||||||||||||| |||  ||  ||||| ||||    
T  51499730 tgccattaagaaattgacagaaaagcaccttgagcaagacaagagggagctacatggtgataatcaggatggagagaccactgttaacaagcttgataat 51499829  T
Q  124 tcatctt 130  Q
    |||||||    
T  51499830 tcatctt 51499836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 436 - 515
Target Start/End: Complemental strand, 37260991 - 37260912
Alignment:
Q  436 gaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgc 515  Q
    ||||| |||| |||| |||||||||||| ||||||| ||||||||||||| ||||  |||||| ||||||||||||||||    
T  37260991 gaattatgctctttacccaaacggttttgcccattctcaaagtaaatgtccaaaatgcccctatgcatgttaactcacgc 37260912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 433
Target Start/End: Complemental strand, 30203950 - 30203882
Alignment:
Q  365 accatgataaaattgatactatctctccttttccttatttgactgaagtcttggcttatgctttatttt 433  Q
    ||||||||||||||||| |||||||||||||||| || ||||   ||||||| ||||||||||||||||    
T  30203950 accatgataaaattgatgctatctctccttttccctacttgatctaagtcttagcttatgctttatttt 30203882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 519
Target Start/End: Complemental strand, 5119109 - 5119026
Alignment:
Q  436 gaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagt 519  Q
    ||||| |||| ||||||||||||||||| | |||||| ||||||||||||||||| ||  |||| ||| |||||||||| ||||    
T  5119109 gaattctgctctttatccaaacggttttgctcattcctaaagtaaatgtctaaaatactgctacacatattaactcacgttagt 5119026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 487 - 538
Target Start/End: Complemental strand, 10884516 - 10884465
Alignment:
Q  487 aaaacacccctacgcatgttaactcacgctagtattaaatttgcgttagtta 538  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||| |||||    
T  10884516 aaaatacccctacacatgttaactcacgctagtgttaaatttgcgtgagtta 10884465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 519
Target Start/End: Original strand, 37259311 - 37259394
Alignment:
Q  436 gaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagt 519  Q
    ||||| |||| |||||| |||||||||| | |||| ||||||||||||||| |||  | |||||| ||||||| ||||||||||    
T  37259311 gaattatgctctttatctaaacggttttgctcatttccaaagtaaatgtctgaaatgctcctacgtatgttaattcacgctagt 37259394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 516
Target Start/End: Original strand, 2093846 - 2093891
Alignment:
Q  471 cccaaagtaaatgtctaaaacacccctacgcatgttaactcacgct 516  Q
    |||||| |||||||| |||| |||||||||||||||||||||||||    
T  2093846 cccaaaataaatgtccaaaatacccctacgcatgttaactcacgct 2093891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 514
Target Start/End: Original strand, 35391506 - 35391553
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacg 514  Q
    ||||||||||||||||||| |||| || | ||||||||||||||||||    
T  35391506 cattcccaaagtaaatgtccaaaatactcatacgcatgttaactcacg 35391553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 512
Target Start/End: Complemental strand, 2094409 - 2094364
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaactca 512  Q
    |||| ||||||||||||||||||| | |||||||||| ||||||||    
T  2094409 catttccaaagtaaatgtctaaaatatccctacgcatattaactca 2094364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 530
Target Start/End: Complemental strand, 42883831 - 42883738
Alignment:
Q  437 aattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagtattaaatttgc 530  Q
    |||| |||| |||| | ||| |||||| | |||| | ||| |||||||| |||| | |||||| ||||||||||||||| ||| ||||||||||    
T  42883831 aattatgctctttagctaaatggttttgctcatttctaaaataaatgtccaaaatatccctacacatgttaactcacgcaagtgttaaatttgc 42883738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 172 - 367
Target Start/End: Original strand, 27398531 - 27398727
Alignment:
Q  172 ttagacggcgctctctgggatatttttcggagagaggatgtacctaaattggaggaatatttcaagaagcatttcagagagttcaagcatgtccactgct 271  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||  |||| |||||||| | |||||||||||||||||||||| ||||||||| ||||    
T  27398531 ttagatggtgctctttgggatatttttcggagagaggatgtacctgcattgcaggaatatctgaagaagcatttcagagagttcaggcatgtccattgct 27398630  T
Q  272 gtcctttaatgtaggtaaaattagttaagataattttctattatccgttgggatg-cctcttttaacttgagtcattaactaaactttgttgctacc 367  Q
     |||||||  | ||||||| ||||||   |||||||||||| ||| ||| ||||| || || |||||| ||||||||||  |||||| |||||||||    
T  27398631 ctcctttagaggaggtaaagttagttgttataattttctatcatctgtttggatgccccctgttaactggagtcattaatgaaacttagttgctacc 27398727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 172 - 316
Target Start/End: Original strand, 43162761 - 43162905
Alignment:
Q  172 ttagacggcgctctctgggatatttttcggagagaggatgtacctaaattggaggaatatttcaagaagcatttcagagagttcaagcatgtccactgct 271  Q
    ||||| || ||||||||||||||||||||||||||||||||||| |||||| |||||||| | || |||||||||||||||||||  |||||| | |||     
T  43162761 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatataaaaaagcatttcagagagttcagacatgtcaattgca 43162860  T
Q  272 gtcctttaatgtaggtaaaattagttaagataattttctattatc 316  Q
    ||||||||| | ||||||||| || | ||| ||||||| ||||||    
T  43162861 gtcctttaaagcaggtaaaatcagcttagacaattttccattatc 43162905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 171 - 290
Target Start/End: Complemental strand, 20866877 - 20866758
Alignment:
Q  171 tttagacggcgctctctgggatatttttcggagagaggatgtacctaaattggaggaatatttcaagaagcatttcagagagttcaagcatgtccactgc 270  Q
    |||||| || |||| ||||||||||||||||||||||||||| || |||||| |||||||| | ||||||||||   ||||||||| |||| || | ||     
T  20866877 tttagatggtgctcactgggatatttttcggagagaggatgtgccgaaattgaaggaatatctgaagaagcattctggagagttcaggcatatctattgt 20866778  T
Q  271 tgtcctttaatgtaggtaaa 290  Q
    | |||||||| | |||||||    
T  20866777 tctcctttaaagcaggtaaa 20866758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 27398420 - 27398499
Alignment:
Q  28 attaagaaactgacgcaaaagcaccttgagcaagacagaagggagttacatgctcataatcaggatggagagaccaatgt 107  Q
    ||||||||| |||  ||||||||||||||||||||||  |||||| |||||| | ||| |||||||||||||||||||||    
T  27398420 attaagaaattgaaacaaaagcaccttgagcaagacaagagggagctacatggtgatattcaggatggagagaccaatgt 27398499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 20867067 - 20867004
Alignment:
Q  44 aaaagcaccttgagcaagacagaagggagttacatgctcataatcaggatggagagaccaatgt 107  Q
    |||||||||||||||||||||  |||||| |||||| | ||||||| |||||||||||||||||    
T  20867067 aaaagcaccttgagcaagacaagagggagctacatggtgataatcaagatggagagaccaatgt 20867004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 515
Target Start/End: Complemental strand, 17644647 - 17644599
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgc 515  Q
    ||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  17644647 cattcccaaagtaaatgtccaaaatacccctacgcatgttaattcacgc 17644599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 563
Target Start/End: Complemental strand, 40266635 - 40266539
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagtattaaatttgcgttagttaggtcacgctgcgtgacttaagtcac 563  Q
    ||||||||||||||||| | ||||  ||| | ||   |||||||||||||| | |||||||||||| |||||  ||||||| |||||||||||||||    
T  40266635 cattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactcacgctaatgttaaatttgcgtgagttaactcacgctacgtgacttaagtcac 40266539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 519
Target Start/End: Original strand, 1145153 - 1145224
Alignment:
Q  448 ttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagt 519  Q
    |||||||||| ||||  | ||||||||||||||||| | ||||  || ||||||||||||||||||||||||    
T  1145153 ttatccaaacagtttcgctcattcccaaagtaaatgaccaaaatgcctctacgcatgttaactcacgctagt 1145224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 487 - 538
Target Start/End: Complemental strand, 17344860 - 17344809
Alignment:
Q  487 aaaacacccctacgcatgttaactcacgctagtattaaatttgcgttagtta 538  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||| |||||    
T  17344860 aaaatacccctacgcatgttaactcacgctagtgttaattttgcgtgagtta 17344809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 517
Target Start/End: Complemental strand, 6158989 - 6158940
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgcta 517  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  6158989 cattcccaaagtaaatgtctaaaata-ccctacgtatgttaactcacgcta 6158940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 515
Target Start/End: Original strand, 7335534 - 7335612
Alignment:
Q  437 aattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgc 515  Q
    |||| |||| ||||||||||||||||| | |||||| ||| |||||| | |||| |||||||  |||||||||||||||    
T  7335534 aattctgctttttatccaaacggttttgctcattcctaaaataaatgaccaaaatacccctatacatgttaactcacgc 7335612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 519
Target Start/End: Original strand, 6158131 - 6158178
Alignment:
Q  472 ccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagt 519  Q
    |||||||||||| |  ||| ||||||||||||||||||||||||||||    
T  6158131 ccaaagtaaatgaccgaaatacccctacgcatgttaactcacgctagt 6158178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 563
Target Start/End: Complemental strand, 17644591 - 17644532
Alignment:
Q  504 gttaactcacgctagtattaaatttgcgttagttaggtcacgctgcgtgacttaagtcac 563  Q
    |||||||||||||||| |||||||| | | |||||  |||||||||||||||||| ||||    
T  17644591 gttaactcacgctagtgttaaatttacatgagttaactcacgctgcgtgacttaaatcac 17644532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 484
Target Start/End: Original strand, 3758916 - 3758970
Alignment:
Q  430 ttttatgaattttgctatttatccaaacggttttacccattcccaaagtaaatgt 484  Q
    |||| |||||| |||| |||| | |||||||||||| ||||||||||||||||||    
T  3758916 ttttttgaattctgctctttaccaaaacggttttactcattcccaaagtaaatgt 3758970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 563
Target Start/End: Original strand, 7164265 - 7164323
Alignment:
Q  505 ttaactcacgctagtattaaatttgcgttagttaggtcacgctgcgtgacttaagtcac 563  Q
    ||||||||||||| | |||||||||| | |||||  |||||| ||||||||||||||||    
T  7164265 ttaactcacgctaatgttaaatttgcatgagttaattcacgccgcgtgacttaagtcac 7164323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 27398799 - 27398867
Alignment:
Q  369 tgataaaattgatactatctc--tccttttccttatttgactgaagtcttggcttatgctttattttat 435  Q
    |||||||||||| ||||||||  | ||||||| ||||||||  || |||| ||||||||||||||||||    
T  27398799 tgataaaattgacactatctcattgcttttccctatttgacctaattcttagcttatgctttattttat 27398867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 519
Target Start/End: Original strand, 11135772 - 11135824
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagt 519  Q
    |||| ||||| |||||| | |||| ||||||||||||||||||| ||||||||    
T  11135772 catttccaaaataaatgaccaaaatacccctacgcatgttaacttacgctagt 11135824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 490
Target Start/End: Original strand, 16879207 - 16879255
Alignment:
Q  442 tgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaa 490  Q
    |||| ||||||||||| ||||| ||||||| ||||||||||||| ||||    
T  16879207 tgctttttatccaaactgttttgcccattctcaaagtaaatgtccaaaa 16879255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 171 - 290
Target Start/End: Complemental strand, 135621 - 135502
Alignment:
Q  171 tttagacggcgctctctgggatatttttcggagagaggatgtacctaaattggaggaatatttcaagaagcatttcagagagttcaagcatgtccactgc 270  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||||||| |||| || | |||    
T  135621 tttagatggtgctctctgggatatttttcggagagaggatgtacctaaattgaaggaatatctgatgaagcatttcagagagttcaggcatatctattgc 135522  T
Q  271 tgtcctttaatgtaggtaaa 290  Q
    | |||||||| | |||||||    
T  135521 tctcctttaaagcaggtaaa 135502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 135830 - 135732
Alignment:
Q  28 attaagaaactgacgcaaaagcaccttgagcaagacagaagggagttaca---tgctcataatcaggatggagagaccaatgtcgacgtgcttggtaat 123  Q
    ||||||||| |||| ||||||||||||||||||||||  |||||| |||    || | ||||||||||||||||||||||||| |||| ||||| ||||    
T  135830 attaagaaattgacacaaaagcaccttgagcaagacaagagggagctactaattggtgataatcaggatggagagaccaatgttgacgggcttgataat 135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 235 - 349
Target Start/End: Original strand, 36549945 - 36550061
Alignment:
Q  235 aagaagcatttcaga-gagttcaagcatgtccactgctgtcctttaatgtaggtaaaattagttaagataattttctattatccgttgggatgcctc-tt 332  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||||| | |||||||||| ||| |||||||||||||||||||| ||  ||||| | ||    
T  36549945 aagaagcatttcagaagagttcaggcatgtccactgctctcctttaaagcaggtaaaatttgtttagataattttctattatccgctgaaatgccccttt 36550044  T
Q  333 ttaacttgagtcattaa 349  Q
    |||||||||| ||||||    
T  36550045 ttaacttgagccattaa 36550061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 36549803 - 36549904
Alignment:
Q  26 ccattaagaaactgacgcaaaagcaccttgagcaagacagaagggagttacatgctcataatcaggatggagagaccaatgtcgacgtgcttggtaattc 125  Q
    ||||||||||| |||  |||||||||||||||||||| |  |||| | |||||| | ||||||||||||||||||||| |||  || |||||| ||||||    
T  36549803 ccattaagaaattgatacaaaagcaccttgagcaagataagagggtgctacatggtgataatcaggatggagagaccactgttaacatgcttgataattc 36549902  T
Q  126 at 127  Q
    ||    
T  36549903 at 36549904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 538
Target Start/End: Original strand, 8150180 - 8150271
Alignment:
Q  447 tttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagtattaaatttgcgttagtta 538  Q
    |||| ||||||| |||| | ||||||||||| || || | |||| ||||||||| ||||||||||| |||| | |||||| ||||| |||||    
T  8150180 tttacccaaacgtttttgctcattcccaaagaaactgaccaaaatacccctacgtatgttaactcatgctaatgttaaatatgcgtgagtta 8150271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 509
Target Start/End: Complemental strand, 53827708 - 53827666
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaac 509  Q
    ||||||||||||||||||| ||||  |||||||||||||||||    
T  53827708 cattcccaaagtaaatgtccaaaatgcccctacgcatgttaac 53827666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 514
Target Start/End: Original strand, 3539666 - 3539746
Alignment:
Q  434 atgaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacg 514  Q
    ||||||| |||| |||||||||| |||||| | |||| ||||| ||||||   |||| | |||||| ||||||||||||||    
T  3539666 atgaattatgctctttatccaaatggttttgctcatttccaaaataaatgatcaaaatagccctacacatgttaactcacg 3539746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 519
Target Start/End: Original strand, 11342921 - 11342973
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagt 519  Q
    ||||||||||||||| ||| ||||  |||||||||||||||| | ||||||||    
T  11342921 cattcccaaagtaaaagtccaaaaagcccctacgcatgttaatttacgctagt 11342973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 515
Target Start/End: Complemental strand, 54529003 - 54528955
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgc 515  Q
    ||||| ||| ||||||||| |||| |||||||| |||||||||||||||    
T  54529003 cattctcaatgtaaatgtccaaaatacccctacacatgttaactcacgc 54528955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 436 - 521
Target Start/End: Original strand, 806545 - 806630
Alignment:
Q  436 gaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagtat 521  Q
    ||||| |||| |||| |||||| ||||| | ||||| |||||||||||||||||| || |||||| ||||||||||||||||||||    
T  806545 gaattctgctctttacccaaacagttttgctcattctcaaagtaaatgtctaaaatactcctacgtatgttaactcacgctagtat 806630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 519
Target Start/End: Complemental strand, 7204031 - 7203946
Alignment:
Q  434 atgaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagt 519  Q
    ||||||| |||||||| |||||| | |||| | | |||||||||||||||   |||| ||||||||||||||||||||| ||||||    
T  7204031 atgaattctgctatttttccaaatgattttgctcgttcccaaagtaaatgatcaaaatacccctacgcatgttaactcatgctagt 7203946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 563
Target Start/End: Complemental strand, 807185 - 807134
Alignment:
Q  512 acgctagtattaaatttgcgttagttaggtcacgctgcgtgacttaagtcac 563  Q
    |||||||| |||||||||||| |||||  |||| ||||||||||||||||||    
T  807185 acgctagtgttaaatttgcgtgagttaactcacactgcgtgacttaagtcac 807134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 515
Target Start/End: Original strand, 14430944 - 14431023
Alignment:
Q  436 gaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgc 515  Q
    ||||| ||||||||| | |||||||| | | |||| | ||||||||||| |||||   ||||||||||||||||||||||    
T  14430944 gaattctgctatttacctaaacggttctgctcatttctaaagtaaatgtttaaaatgtccctacgcatgttaactcacgc 14431023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 509
Target Start/End: Original strand, 14153385 - 14153427
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaac 509  Q
    ||||||||||||||||| | |||| ||||||||||||||||||    
T  14153385 cattcccaaagtaaatgaccaaaatacccctacgcatgttaac 14153427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 512
Target Start/End: Original strand, 23608458 - 23608503
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaactca 512  Q
    |||||||||| |||| |||||||| | |||||||||||||||||||    
T  23608458 cattcccaaaataaaagtctaaaatatccctacgcatgttaactca 23608503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 510
Target Start/End: Original strand, 17436034 - 17436110
Alignment:
Q  434 atgaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaact 510  Q
    ||||||||||||  |||| |||| ||||   | ||||||||||||||| ||||||||  || |||||||||||||||    
T  17436034 atgaattttgctcattattcaaatggttccgctcattcccaaagtaaaagtctaaaatgcctctacgcatgttaact 17436110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 436 - 563
Target Start/End: Complemental strand, 28139513 - 28139386
Alignment:
Q  436 gaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagtattaaatttgcgttag 535  Q
    ||||| |||| |||| ||||| || ||| ||||||||||||||||||| | ||||  ||||| ||   |||||||||||||||| |||||||||| | ||    
T  28139513 gaattctgctttttacccaaatggatttgcccattcccaaagtaaatgaccaaaatgcccctgcgtgagttaactcacgctagtgttaaatttgcatgag 28139414  T
Q  536 ttaggtcacgctgcgtgacttaagtcac 563  Q
    ||| || ||||||||||| |||| ||||    
T  28139413 ttaagttacgctgcgtgagttaactcac 28139386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 149041 - 149100
Alignment:
Q  504 gttaactcacgctagtattaaatttgcgttagttaggtcacgctgcgtgacttaagtcac 563  Q
    |||||||||||||||| |||||||||||| ||||| |||||| ||| |||||||||||||    
T  149041 gttaactcacgctagtgttaaatttgcgtgagttaagtcacgttgcatgacttaagtcac 149100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 514
Target Start/End: Original strand, 26009369 - 26009447
Alignment:
Q  436 gaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacg 514  Q
    ||||| |||| |||| ||||||| |||| | ||||||||||||||||| | |||| |  ||||||||||||||||||||    
T  26009369 gaattctgctctttacccaaacgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaactcacg 26009447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 517
Target Start/End: Original strand, 19931485 - 19931569
Alignment:
Q  433 tatgaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgcta 517  Q
    |||||||| |||| |||||| ||| |||||| | | ||| ||||||||||| |||||| || | ||||||| |||||||||||||    
T  19931485 tatgaattctgctctttatctaaatggttttgctcgttctcaaagtaaatgactaaaatacacatacgcatattaactcacgcta 19931569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 509
Target Start/End: Complemental strand, 48221745 - 48221703
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaac 509  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||    
T  48221745 cattcccaaagtaaatgtccaaaatacccctacgcatgctaac 48221703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 38676950 - 38677013
Alignment:
Q  447 tttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaact 510  Q
    ||||||||||||||||| | |||||||||| |||||||| |||| ||| |||||||||||||||    
T  38676950 tttatccaaacggttttgctcattcccaaaataaatgtccaaaatacctctacgcatgttaact 38677013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 510
Target Start/End: Original strand, 36217870 - 36217944
Alignment:
Q  436 gaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaact 510  Q
    ||||| |||| ||||  |||| |||||||| ||||||||||||||| ||| ||||  ||||||||||||||||||    
T  36217870 gaattctgctctttactcaaatggttttactcattcccaaagtaaaagtccaaaatgcccctacgcatgttaact 36217944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 528
Target Start/End: Original strand, 54208180 - 54208272
Alignment:
Q  436 gaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagtattaaattt 528  Q
    ||||| |||| |||||||||| |||||| | |||||||||||||||||   |||| |||||||| || ||||||| ||| |||| || |||||    
T  54208180 gaattatgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaacttacgttagtgttgaattt 54208272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 510
Target Start/End: Original strand, 24972421 - 24972464
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaact 510  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||    
T  24972421 cattcctaaagtaaaagtcaaaaacacccctacgcatgttaact 24972464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 558
Target Start/End: Complemental strand, 37999553 - 37999482
Alignment:
Q  487 aaaacacccctacgcatgttaactcacgctagtattaaatttgcgttagttaggtcacgctgcgtgacttaa 558  Q
    |||| |||| ||||||||||||||||||||||| ||||||  |||| | |||  ||||||||||||| ||||    
T  37999553 aaaatacccttacgcatgttaactcacgctagtgttaaatcagcgtgacttaattcacgctgcgtgagttaa 37999482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 519
Target Start/End: Complemental strand, 27992340 - 27992299
Alignment:
Q  478 taaatgtctaaaacacccctacgcatgttaactcacgctagt 519  Q
    |||||||| |||| ||||||| ||||||||||||||||||||    
T  27992340 taaatgtccaaaatacccctatgcatgttaactcacgctagt 27992299  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 519
Target Start/End: Original strand, 27992146 - 27992198
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagt 519  Q
    ||||||||||||||||| |  |||  |||||| ||||||||||||||||||||    
T  27992146 cattcccaaagtaaatgaccgaaatgcccctaagcatgttaactcacgctagt 27992198  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 538
Target Start/End: Original strand, 28360025 - 28360127
Alignment:
Q  435 tgaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagtattaaatttgcgtta 534  Q
    |||||| |||| |||| ||||||  |||||| |||||| |||| || || | |||| ||| |||||||||||||||||||||||| |||||||||||| |    
T  28360025 tgaattctgctctttacccaaacatttttactcattcc-aaagaaactgaccaaaatacctctacgcatgttaactcacgctagtgttaaatttgcgtga 28360123  T
Q  535 gtta 538  Q
    ||||    
T  28360124 gtta 28360127  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 481
Target Start/End: Complemental strand, 13329657 - 13329610
Alignment:
Q  434 atgaattttgctatttatccaaacggttttacccattcccaaagtaaa 481  Q
    ||||||| |||| ||||||||||||||||| ||| |||||||||||||    
T  13329657 atgaattgtgctctttatccaaacggttttgccctttcccaaagtaaa 13329610  T

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Target: scaffold0262 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 519
Target Start/End: Original strand, 8384 - 8467
Alignment:
Q  436 gaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagt 519  Q
    ||||| |||| |||| ||||||| || | | |||| | ||||||||||| ||||| |||| |||||||||||||||||||||||    
T  8384 gaattctgctctttacccaaacgtttctgctcatttctaaagtaaatgtgtaaaatacccttacgcatgttaactcacgctagt 8467  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 558
Target Start/End: Complemental strand, 27235599 - 27235476
Alignment:
Q  435 tgaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagtattaaatttgcgtta 534  Q
    |||||| |||| |||||| ||| | |||| | ||||| ||||| || || |||||| | |||||| |||||||||| |||||| | |||||||||||| |    
T  27235599 tgaattatgctctttatctaaatgtttttgctcattctcaaagaaattgactaaaatatccctacacatgttaacttacgctaatgttaaatttgcgtga 27235500  T
Q  535 gttaggtcacgctgcgtgacttaa 558  Q
    ||||  |||||| |||||| ||||    
T  27235499 gttaaatcacgcagcgtgagttaa 27235476  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 24899113 - 24899056
Alignment:
Q  467 cattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagtattaa 524  Q
    |||||||| |||||||| | |||| || ||||||||||||||||||||||||| ||||    
T  24899113 cattcccagagtaaatgaccaaaatactcctacgcatgttaactcacgctagttttaa 24899056  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 537
Target Start/End: Complemental strand, 1349297 - 1349196
Alignment:
Q  436 gaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaactcacgctagtattaaatttgcgttag 535  Q
    ||||| |||| |||| ||||| | |||| | ||||||| ||  ||||| | |||| |||| ||||||||||||||||| ||| | |||||||||||| ||    
T  1349297 gaattctgctctttacccaaaagtttttgctcattcccgaatgaaatgaccaaaatacccttacgcatgttaactcacactattgttaaatttgcgtgag 1349198  T
Q  536 tt 537  Q
    ||    
T  1349197 tt 1349196  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 509
Target Start/End: Complemental strand, 33220873 - 33220792
Alignment:
Q  428 tattttatgaattttgctatttatccaaacggttttacccattcccaaagtaaatgtctaaaacacccctacgcatgttaac 509  Q
    ||||| ||||||| ||||  ||| ||||| ||||| || ||||||||||||||| ||  ||||  |||||||||||||||||    
T  33220873 tatttcatgaattctgctcattacccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaac 33220792  T

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