View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18357_high_12 (Length: 227)
Name: NF18357_high_12
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18357_high_12 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 15895 - 15669
Alignment:
| Q |
1 |
atgccatcaattatgttgccggtttgatccttgtatttttggatgatcactttgagtgaagacacagcccgcgtaatccagatattttcctcaacaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15895 |
atgccatcaattatgttgccggtttgatccttgtatttttggatgatcactttgagtgaagacacagcccgcgtaatccagatagtttcctcaacaggat |
15796 |
T |
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| Q |
101 |
tgaatggagttttaacagtgtcattacctccaatgcttattatcaccgtcacatttggattatttcccttcaaatttctcactgcttctggaccgaatgc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15795 |
tgaatggagttttaacggtgtcattacctccaatgcttattaccaccttcacatttggattatttcccttcaaatttctcactgcttctggaccgaatgc |
15696 |
T |
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| Q |
201 |
tctagtattccaagtttccttgaaaac |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
15695 |
tctagtattccaagtttccttgaaaac |
15669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 26063 - 25837
Alignment:
| Q |
1 |
atgccatcaattatgttgccggtttgatccttgtatttttggatgatcactttgagtgaagacacagcccgcgtaatccagatattttcctcaacaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26063 |
atgccatcaattatgttgccggtttgatccttgtatttttggatgatcactttgagtgaagacacagcccgcgtaatccagatagtttcctcaacaggat |
25964 |
T |
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| Q |
101 |
tgaatggagttttaacagtgtcattacctccaatgcttattatcaccgtcacatttggattatttcccttcaaatttctcactgcttctggaccgaatgc |
200 |
Q |
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| T |
25963 |
tgaatggagttttaacggtgtcattacctccaatgcttattaccaccttcacatttggattatttcccttcaaatttctcactgcttctggaccgaatgc |
25864 |
T |
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| Q |
201 |
tctagtattccaagtttccttgaaaac |
227 |
Q |
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| T |
25863 |
tctagtattccaagtttccttgaaaac |
25837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36229 - 36003
Alignment:
| Q |
1 |
atgccatcaattatgttgccggtttgatccttgtatttttggatgatcactttgagtgaagacacagcccgcgtaatccagatattttcctcaacaggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36229 |
atgccatcaattatgttgccggtttgatccttgtatttttggatgatcactttgagtgaagacacagcccgcgtaatccagatagtttcctcaacaggat |
36130 |
T |
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| Q |
101 |
tgaatggagttttaacagtgtcattacctccaatgcttattatcaccgtcacatttggattatttcccttcaaatttctcactgcttctggaccgaatgc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36129 |
tgaatggagttttaacggtgtcattacctccaatgcttattaccaccttcacatttggattatttcccttcaaatttctcactgcttctggaccgaatgc |
36030 |
T |
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| Q |
201 |
tctagtattccaagtttccttgaaaac |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36029 |
tctagtattccaagtttccttgaaaac |
36003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 5542 - 5395
Alignment:
| Q |
23 |
tttgatccttgtatttttggatgatcactttgagtgaagacacagcccgcgtaatccagatattttcctcaacaggattgaatggagttttaacagtgtc |
122 |
Q |
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||||||||||| || || ||||||||||||||||||||| |||||| | |||| ||||| |||||| ||||||||||||||||||| | ||| |
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| T |
5542 |
tttgatccttgaatcttaggatgatcactttgagtgaagccacagctttctccgtccatatattatcctcagcaggattgaatggagttttttc---gtc |
5446 |
T |
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| Q |
123 |
attacctccaatgcttattatcaccgtcacatttggattatttcccttcaa |
173 |
Q |
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| T |
5445 |
acaacctccaaagcttattaccaccttcacatttttattattttccttcaa |
5395 |
T |
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