View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18357_high_3 (Length: 480)
Name: NF18357_high_3
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18357_high_3 |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: scaffold0318 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 13 - 466
Target Start/End: Complemental strand, 16256 - 15803
Alignment:
| Q |
13 |
aatataaatatcaacaactcaagttctagtcaaaccataattaaacacaaggaatattttctcatgattgtggaagcattaatgatgaaaagccaatgca |
112 |
Q |
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| T |
16256 |
aatataaatatcaacaactcaagttctagtcaaaccataattaaacacaaggaatattttctcatgattgtggaagcattaatgatgaaaagccaatgca |
16157 |
T |
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| Q |
113 |
tttcttagagatatcactaaaaaacatataacatcatttacattttataattttacagggtgctgtgttagaacttagaagcaaaacaaaccctcaagga |
212 |
Q |
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| T |
16156 |
tttcttagagatatcactaaaaaacatataacatcatttacattttataattttacagggtgctgtgttagaacttagaaacaaaacaaacccccaagga |
16057 |
T |
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| Q |
213 |
cctaaacataactcaattcatctataataaaaccaaccaccataaaatttgaagtggtaaaattataaaactcctattatgtaagtaagaggaattcaaa |
312 |
Q |
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| T |
16056 |
cctaaacataactcaattcatctataataaaaccaaccaccataaaatttgaagtggtaaaattataaaactcctattatggaagtaagaggaattcaaa |
15957 |
T |
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| Q |
313 |
tgaaaataaaggacagaaaattatgaaccaatctcattaattaactatgattttgcagatttaataaaaccattgaaattggcacattcaaacaaagctt |
412 |
Q |
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| T |
15956 |
tgaaaataaaggactagaaattatgaaccaatctcattaattaactatgattttgcagatttaataaaaccattgaaattggcacattcaaacaaagctt |
15857 |
T |
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| Q |
413 |
tagcagtcatttccctctcaaatctccaaatatagttcaacccaacaagcaact |
466 |
Q |
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| T |
15856 |
tagcagtcatttccctctcaaacctccaaatataattcaacccaacaagcaact |
15803 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 464
Target Start/End: Complemental strand, 21615700 - 21615632
Alignment:
| Q |
396 |
acattcaaacaaagctttagcagtcatttccctctcaaatctccaaatatagttcaacccaacaagcaa |
464 |
Q |
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| T |
21615700 |
acattgaaacaaagccttagccgtcatttccctctcaaacctccaaacataattcaaaccaacgagcaa |
21615632 |
T |
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