View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18357_low_1 (Length: 570)

Name: NF18357_low_1
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18357_low_1
NF18357_low_1
[»] chr8 (14 HSPs)
chr8 (1-259)||(5947306-5947564)
chr8 (257-519)||(5947013-5947273)
chr8 (201-259)||(5982892-5982950)
chr8 (204-259)||(5919421-5919476)
chr8 (128-184)||(5919466-5919522)
chr8 (59-153)||(5958458-5958564)
chr8 (1-59)||(5983119-5983177)
chr8 (1-62)||(5958598-5958659)
chr8 (103-165)||(5982964-5983027)
chr8 (400-469)||(5982740-5982807)
chr8 (3-62)||(5919953-5920012)
chr8 (483-531)||(5958217-5958265)
chr8 (257-318)||(5958321-5958376)
chr8 (201-246)||(5847388-5847437)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 5947564 - 5947306
Alignment:
Q  1 catcctcaagcagccaatttgtcacaaatcctattattcctttaggatgggagtcttaattatttctatgcatttgattatatatgtaatgtatttttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947564 catcctcaagcagccaatttgtcacaaatcctattattcctttaggatgggagtcttaattatttctatgcatttgattatatatgtaatgtatttttgt 5947465  T
Q  101 tgttgtcaagagtgtgtagagcttttatttatttgctaacctgaacattgctagttcaggcacttacatgaagtgatgcttgtttttatttgaatggatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947464 tgttgtcaagagtgtgtagagcttttatttatttgctaacctgaacattgctagttcaggcacttacatgaagtgatgcttgtttttatttgaatggatg 5947365  T
Q  201 aagtgatgcttgttgaagttcaataaatatgtaatgtacgtttaggatccatttgcatg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947364 aagtgatgcttgttgaagttcaataaatatgtaatgtacgtttaggatccatttgcatg 5947306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 257 - 519
Target Start/End: Complemental strand, 5947273 - 5947013
Alignment:
Q  257 atgttatttatggagagctacatgtgattgttatttgtaactaattatgtgtccattagggtgtactttaaaataaggnnnnnnnccggttcaggcactt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||    
T  5947273 atgttatttatggagagctacatgtgattgttatttgtaactaattatgtatccattagggtgtactttaaaataaggtttttt-ccggttcaggcactt 5947175  T
Q  357 aaattaagcatttacgtcgtttgttccatttatggatgatgacctacatccttgttaattaaaggctagtgtcctttaatttgacctataggtagaggag 456  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  5947174 aaattaagcgtttacgtcgtttgttccatttatggatgatgacctacatctttgtcaattaaaggctagtgtcctttaatttgacc--taggtagaggag 5947077  T
Q  457 gccagcatgcatacatactccaaaagctttatgaagca-tgcaatgtcaaccaaactataccgt 519  Q
    |||||||||||| |||||||||||||||||||||| || |||| ||||||||||||| ||||||    
T  5947076 gccagcatgcatgcatactccaaaagctttatgaaacattgcattgtcaaccaaactttaccgt 5947013  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 5982950 - 5982892
Alignment:
Q  201 aagtgatgcttgttgaagttcaataaatatgtaatgtacgtttaggatccatttgcatg 259  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  5982950 aagtgatgcttgttaaagttcaataaatatgaaatgtacgtttaggatccatttgcatg 5982892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 5919476 - 5919421
Alignment:
Q  204 tgatgcttgttgaagttcaataaatatgtaatgtacgtttaggatccatttgcatg 259  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  5919476 tgatgcttgttgaagttcaataaatatgtaatgtacttttaggttccatttgcatg 5919421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 5919522 - 5919466
Alignment:
Q  128 tttatttgctaacctgaacattgctagttcaggcacttacatgaagtgatgcttgtt 184  Q
    |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||    
T  5919522 tttatttgttaacctgaacattgctagttcaggcacttacattaaatgatgcttgtt 5919466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 5958564 - 5958458
Alignment:
Q  59 attatttctatgcatttgattatatatgtaatgtatttt--tgttgttgtcaagagtgtgt----------agagcttttatttatttgctaacctgaac 146  Q
    ||||||||| ||||||  |||||||||||||||||||||  | ||||||||||||||||||          |||||||||||||||||||||||||||||    
T  5958564 attatttctttgcattaaattatatatgtaatgtattttaattttgttgtcaagagtgtgtgtgtgtgtgtagagcttttatttatttgctaacctgaac 5958465  T
Q  147 attgcta 153  Q
    |||||||    
T  5958464 attgcta 5958458  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5983177 - 5983119
Alignment:
Q  1 catcctcaagcagccaatttgtcacaaatcctattattcctttaggatgggagtcttaa 59  Q
    ||||||||||||||||  | ||||| |||||||||||||||||||||||||||||||||    
T  5983177 catcctcaagcagccacatagtcactaatcctattattcctttaggatgggagtcttaa 5983119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5958659 - 5958598
Alignment:
Q  1 catcctcaagcagccaatttgtcacaaatcctattattcctttaggatgggagtcttaatta 62  Q
    |||| |||| ||||||| | |||||||||||||| |||||||||||||||||||||||||||    
T  5958659 catcatcaatcagccaaatagtcacaaatcctataattcctttaggatgggagtcttaatta 5958598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 5983027 - 5982964
Alignment:
Q  103 ttgtcaagagtgtgtagagctttta-tttatttgctaacctgaacattgctagttcaggcactt 165  Q
    ||||||||||||||||||||||||| | |||||| |||| |||||| |||||||||||||||||    
T  5983027 ttgtcaagagtgtgtagagcttttagtgtatttgttaacttgaacactgctagttcaggcactt 5982964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 5982807 - 5982740
Alignment:
Q  400 ctacatccttgttaattaaaggctagtgtcctttaatttgacctataggtagaggaggccagcatgcata 469  Q
    ||||||||| || |||||||||||||||| ||||||||||||   || ||||||||||||||||||||||    
T  5982807 ctacatcctggtgaattaaaggctagtgtactttaatttgac--gtacgtagaggaggccagcatgcata 5982740  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 5920012 - 5919953
Alignment:
Q  3 tcctcaagcagccaatttgtcacaaatcctattattcctttaggatgggagtcttaatta 62  Q
    ||||||||||||||| | |||| |||||||| |||||| |||||||||||| ||||||||    
T  5920012 tcctcaagcagccaagtagtcaaaaatcctactattccattaggatgggagccttaatta 5919953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 5958265 - 5958217
Alignment:
Q  483 ctttatgaagcatgcaatgtcaaccaaactataccgttgtatatatata 531  Q
    |||||||||||||||| ||||||||||||| |||| |||| ||||||||    
T  5958265 ctttatgaagcatgcattgtcaaccaaactttaccattgtgtatatata 5958217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 5958376 - 5958321
Alignment:
Q  257 atgttatttatggagagctacatgtgattgttatttgtaactaattatgtgtccattagggt 318  Q
    ||||||||||||||||||||||||| |||||      ||||||||||||| |||||||||||    
T  5958376 atgttatttatggagagctacatgttattgt------taactaattatgtttccattagggt 5958321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 5847437 - 5847388
Alignment:
Q  201 aagtgatgcttgttgaagttcaataaa----tatgtaatgtacgtttagg 246  Q
    |||||||| ||||||||||||||||||    |||||||||||||||||||    
T  5847437 aagtgatgtttgttgaagttcaataaaatactatgtaatgtacgtttagg 5847388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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