View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18357_low_13 (Length: 245)

Name: NF18357_low_13
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18357_low_13
NF18357_low_13
[»] scaffold0062 (3 HSPs)
scaffold0062 (1-227)||(16054-16278)
scaffold0062 (1-227)||(26222-26446)
scaffold0062 (1-227)||(36388-36612)


Alignment Details
Target: scaffold0062 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 16054 - 16278
Alignment:
Q  1 accgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatctaatgctgtatccacacttgacgactttctaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16054 accgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatctaaagctgtatccacacttgacgactttctaaa 16153  T
Q  101 actctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaagcttcacattgagcctatgtagacaagatgccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  16154 actctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaagcttcacattgagcc--tgtagacaagatgccaa 16251  T
Q  201 gggagcacttcattgctggctgcagac 227  Q
    |||||||||||||||||||||||||||    
T  16252 gggagcacttcattgctggctgcagac 16278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26222 - 26446
Alignment:
Q  1 accgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatctaatgctgtatccacacttgacgactttctaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26222 accgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatctaaagctgtatccacacttgacgactttctaaa 26321  T
Q  101 actctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaagcttcacattgagcctatgtagacaagatgccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  26322 actctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaagcttcacattgagcc--tgtagacaagatgccaa 26419  T
Q  201 gggagcacttcattgctggctgcagac 227  Q
    |||||||||||||||||||||||||||    
T  26420 gggagcacttcattgctggctgcagac 26446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 36388 - 36612
Alignment:
Q  1 accgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatctaatgctgtatccacacttgacgactttctaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36388 accgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatctaaagctgtatccacacttgacgactttctaaa 36487  T
Q  101 actctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaagcttcacattgagcctatgtagacaagatgccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  36488 actctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaagcttcacattgagcc--tgtagacaagatgccaa 36585  T
Q  201 gggagcacttcattgctggctgcagac 227  Q
    |||||||||||||||||||||||||||    
T  36586 gggagcacttcattgctggctgcagac 36612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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