View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18357_low_14 (Length: 237)
Name: NF18357_low_14
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18357_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36283701 - 36283923
Alignment:
| Q |
1 |
gatgatttgagctcctcttgttggttgaattttt-catagctctcaagtagatc-aaagtgtgtatatttcaaaataaaatttgagactatatatcatct |
98 |
Q |
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| T |
36283701 |
gatgatttgagctcctcttgttggttgaattttttcatagctctcaagtagatccaaagtgtgtatatttcaaaataaaatctgagactatatatcatct |
36283800 |
T |
|
| Q |
99 |
tctggcaattctcttatatccaaataacaaggacaccaatgataataattataaaagtaataataacaatgatactaatgagaattaattggattttata |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
36283801 |
tctggcaattctcttatatccaaataacaaggacaccaatgatgatagttataaaagtaataataacaatgatactaatgagaattaactggatttcata |
36283900 |
T |
|
| Q |
199 |
gagaggtagagtaatgtgcattc |
221 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
36283901 |
gagaggtagagtaatgtgcattc |
36283923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 11098620 - 11098418
Alignment:
| Q |
1 |
gatgatttgagctcctcttgttggttgaatttttcatagctctcaagtagatc-aaagtgtgtatatttcaaaataaaatttgagactatatatcatctt |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
11098620 |
gatgatttgagctcctcttgttggttgaatttttcatagctctcaagtagatccaaagtatgtatatttcaaaataaaatctgagactatatatcatctt |
11098521 |
T |
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| Q |
100 |
ctggcaattctcttatatccaaataacaaggacaccaatgataataattataaaagtaataataacaatgatactaatgagaattaattggattttatag |
199 |
Q |
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| T |
11098520 |
ctggcaattctcttatatccaaataacaaggacaccaatgataataattataaaagtaataataacaatgatactaatgagaattaactggattttatag |
11098421 |
T |
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| Q |
200 |
aga |
202 |
Q |
| |
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||| |
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| T |
11098420 |
aga |
11098418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 17998709 - 17998911
Alignment:
| Q |
1 |
gatgatttgagctcctcttgttggttgaatttttcatagctctcaagtagatc-aaagtgtgtatatttcaaaataaaatttgagactatatatcatctt |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
17998709 |
gatgatttgagctcctcttgttggttgaatttttcatagctctcaagtagatccaaagtatgtatatttcaaaataaaatctgagactatatatcatctt |
17998808 |
T |
|
| Q |
100 |
ctggcaattctcttatatccaaataacaaggacaccaatgataataattataaaagtaataataacaatgatactaatgagaattaattggattttatag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17998809 |
ctggcaattctcttatatccaaataacaaggacaccaatgataataattataaaagtaataataacaatgatactaatgagaattaactggattttatag |
17998908 |
T |
|
| Q |
200 |
aga |
202 |
Q |
| |
|
||| |
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|
| T |
17998909 |
aga |
17998911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6530749 - 6530815
Alignment:
| Q |
1 |
gatgatttgagctcctcttgttggttgaatttttcatagctctcaagtagat-caaagtgtgtatat |
66 |
Q |
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||||| ||||||||||||||||||||| || || |||||||||||||||||| |||||||||||||| |
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| T |
6530749 |
gatgaattgagctcctcttgttggttggatcttccatagctctcaagtagatccaaagtgtgtatat |
6530815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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