View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18357_low_18 (Length: 203)

Name: NF18357_low_18
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18357_low_18
NF18357_low_18
[»] chr4 (17 HSPs)
chr4 (91-172)||(38676938-38677019)
chr4 (92-172)||(36217869-36217949)
chr4 (92-172)||(38677661-38677741)
chr4 (90-163)||(54208188-54208261)
chr4 (97-172)||(36498905-36498980)
chr4 (97-143)||(40450959-40451005)
chr4 (98-171)||(33164510-33164583)
chr4 (98-142)||(36172194-36172238)
chr4 (97-143)||(24972418-24972464)
chr4 (93-159)||(27992304-27992370)
chr4 (107-173)||(37576541-37576607)
chr4 (108-174)||(47177909-47177975)
chr4 (93-146)||(27992140-27992193)
chr4 (98-159)||(36174584-36174645)
chr4 (98-143)||(46817437-46817482)
chr4 (98-146)||(24974151-24974199)
chr4 (98-154)||(53265809-53265865)
[»] chr6 (13 HSPs)
chr6 (139-194)||(18085647-18085702)
chr6 (93-173)||(806543-806623)
chr6 (93-172)||(14431474-14431553)
chr6 (98-172)||(14153353-14153427)
chr6 (95-147)||(7203953-7204005)
chr6 (93-172)||(14430943-14431022)
chr6 (90-173)||(2559616-2559699)
chr6 (97-143)||(17436064-17436110)
chr6 (95-141)||(23608457-23608503)
chr6 (98-143)||(32274212-32274257)
chr6 (98-143)||(35060900-35060945)
chr6 (95-159)||(23608981-23609045)
chr6 (107-143)||(25400861-25400897)
[»] chr7 (10 HSPs)
chr7 (92-171)||(26009369-26009448)
chr7 (92-168)||(26604172-26604248)
chr7 (98-172)||(38790883-38790958)
chr7 (92-174)||(26011952-26012034)
chr7 (110-172)||(28138758-28138820)
chr7 (116-174)||(42548158-42548216)
chr7 (126-175)||(25428727-25428776)
chr7 (98-141)||(48221703-48221746)
chr7 (105-143)||(20379680-20379718)
chr7 (98-171)||(1537251-1537324)
[»] chr1 (19 HSPs)
chr1 (93-175)||(37260913-37260995)
chr1 (94-163)||(35392105-35392174)
chr1 (98-154)||(45688325-45688381)
chr1 (97-143)||(28442950-28442996)
chr1 (90-171)||(5119028-5119109)
chr1 (98-159)||(45691053-45691114)
chr1 (99-159)||(45691196-45691256)
chr1 (99-159)||(45691338-45691398)
chr1 (90-141)||(35391505-35391556)
chr1 (98-171)||(3792560-3792633)
chr1 (98-171)||(39650196-39650269)
chr1 (93-144)||(2093837-2093889)
chr1 (97-173)||(33403130-33403206)
chr1 (92-171)||(11821160-11821239)
chr1 (97-172)||(48025555-48025630)
chr1 (126-171)||(5602944-5602989)
chr1 (120-173)||(42883106-42883159)
chr1 (98-143)||(50069239-50069284)
chr1 (93-149)||(42883754-42883810)
[»] scaffold0041 (1 HSPs)
scaffold0041 (97-182)||(24369-24454)
[»] chr8 (10 HSPs)
chr8 (98-171)||(33220792-33220865)
chr8 (93-172)||(24899066-24899145)
chr8 (98-178)||(5967242-5967322)
chr8 (94-173)||(1349220-1349299)
chr8 (97-171)||(43640977-43641051)
chr8 (99-171)||(14087850-14087922)
chr8 (92-172)||(23558982-23559062)
chr8 (123-171)||(26229068-26229116)
chr8 (123-174)||(37686613-37686664)
chr8 (99-172)||(35841396-35841469)
[»] chr3 (26 HSPs)
chr3 (97-182)||(19866722-19866807)
chr3 (98-171)||(6162687-6162760)
chr3 (95-171)||(30533880-30533956)
chr3 (93-171)||(54528956-54529034)
chr3 (91-148)||(2652934-2652991)
chr3 (99-172)||(53814567-53814640)
chr3 (91-163)||(3539676-3539748)
chr3 (92-144)||(47064891-47064943)
chr3 (92-172)||(50663874-50663954)
chr3 (95-162)||(8150178-8150245)
chr3 (104-171)||(40517534-40517601)
chr3 (107-177)||(4969869-4969939)
chr3 (97-143)||(15042010-15042056)
chr3 (97-143)||(34086844-34086890)
chr3 (98-171)||(35995137-35995210)
chr3 (97-174)||(39688756-39688833)
chr3 (98-143)||(53827666-53827711)
chr3 (97-172)||(7666966-7667041)
chr3 (98-177)||(44833464-44833543)
chr3 (98-140)||(2325566-2325608)
chr3 (99-141)||(11342920-11342962)
chr3 (98-178)||(15040674-15040754)
chr3 (93-173)||(26998287-26998367)
chr3 (98-142)||(42947404-42947448)
chr3 (124-172)||(44430417-44430465)
chr3 (99-171)||(53101163-53101235)
[»] chr2 (11 HSPs)
chr2 (92-159)||(37893007-37893074)
chr2 (84-175)||(2675142-2675233)
chr2 (98-149)||(11712980-11713031)
chr2 (98-174)||(12967267-12967344)
chr2 (98-135)||(12969269-12969306)
chr2 (107-171)||(22787999-22788063)
chr2 (97-143)||(11573661-11573707)
chr2 (98-171)||(8273245-8273318)
chr2 (98-171)||(18387241-18387314)
chr2 (107-176)||(20685001-20685070)
chr2 (93-173)||(12965047-12965127)
[»] scaffold0262 (1 HSPs)
scaffold0262 (93-171)||(8384-8462)
[»] chr5 (9 HSPs)
chr5 (93-143)||(17644600-17644650)
chr5 (93-154)||(1145158-1145219)
chr5 (93-154)||(7335550-7335611)
chr5 (96-163)||(16879875-16879943)
chr5 (120-171)||(3758922-3758973)
chr5 (97-172)||(11135740-11135815)
chr5 (98-141)||(30489753-30489796)
chr5 (97-143)||(30491799-30491845)
chr5 (98-159)||(19402004-19402065)
[»] scaffold0163 (1 HSPs)
scaffold0163 (104-174)||(35773-35843)
[»] scaffold1763 (1 HSPs)
scaffold1763 (92-173)||(363-444)


Alignment Details
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 38677019 - 38676938
Alignment:
Q  91 aacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    ||||| ||||||||||||||| ||||||||| || |||| ||||||||||||||||||||||||  ||||||||||||||||    
T  38677019 aacgtaagttaacatgcgtagaggtattttggacatttattttgggaatgagcaaaaccgtttggataaagaggagaattct 38676938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 36217949 - 36217869
Alignment:
Q  92 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||||||| |||||| |||| |||||||| ||||||||    
T  36217949 acgtaagttaacatgcgtaggggcattttggacttttactttgggaatgagtaaaaccatttgagtaaagagcagaattct 36217869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 38677661 - 38677741
Alignment:
Q  92 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||| |||||||||||| |||| |||||||||  |||||||||||||||| ||||| |||||| |||||||| ||||||||    
T  38677661 acgtaagttaacatgcgcagggatattttgaatatttactttgggaatgaacaaaatcgtttgggtaaagagcagaattct 38677741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 54208261 - 54208188
Alignment:
Q  90 taacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagag 163  Q
    |||||| ||||||| || ||||||||||||||| | |||||||||||||||||||||||| ||||  |||||||    
T  54208261 taacgtaagttaacttgagtaggggtattttgatcatttactttgggaatgagcaaaaccatttggataaagag 54208188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 36498980 - 36498905
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||| | || ||||| |||| ||| ||||||||    
T  36498980 agttaacatgcataggggcattttcaacttttactttgggaatgagcgatactgtttgagtaatgagcagaattct 36498905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 40451005 - 40450959
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||    
T  40451005 agttaacatgcgtaggggcattttcgacttttactttgggaatgagc 40450959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 33164510 - 33164583
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||||||||| |||||| || ||||||||| ||||||||  |||| |||| |||| ||| |||||||    
T  33164510 gttaacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 33164583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 36172238 - 36172194
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgag 142  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||    
T  36172238 gttaacatacataggggtattttggacttttactttgggaatgag 36172194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 24972464 - 24972418
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    ||||||||||||||||||| ||||  ||||||||||| |||||||||    
T  24972464 agttaacatgcgtaggggtgtttttgacttttactttaggaatgagc 24972418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 27992304 - 27992370
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 159  Q
    ||||||||||||||| ||||||||||||| || |||| ||| | |||||||||| || |||| ||||    
T  27992304 cgtgagttaacatgcataggggtattttggacatttattttagaaatgagcaaatccatttgggtaa 27992370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 37576607 - 37576541
Alignment:
Q  107 cgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 173  Q
    |||||||||| | || || |||||||||| || ||||||||||||||| |||| ||| |||||||||    
T  37576607 cgtaggggtaatatggacatttactttggaaacgagcaaaaccgtttgggtaatgagcagaattctt 37576541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 47177975 - 47177909
Alignment:
Q  108 gtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 174  Q
    ||||||||||||||    ||||||||||||| |||| |||||||||| || ||||| ||||||||||    
T  47177975 gtaggggtattttggtaatttactttgggaacgagcgaaaccgtttgggtcaagagcagaattctta 47177909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 27992193 - 27992140
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaa 146  Q
    ||||||||||||||| |||||| |||| |  | |||||||||||||||||||||    
T  27992193 cgtgagttaacatgcttaggggcatttcggtcatttactttgggaatgagcaaa 27992140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 36174584 - 36174645
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 159  Q
    |||||||||||||| || |||||| | ||||||||||||||||||  ||||| |||| ||||    
T  36174584 gttaacatgcgtagtggcattttggatttttactttgggaatgagtgaaaccatttgagtaa 36174645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 46817437 - 46817482
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    ||||||||||||||||| ||||||||| ||||||||  ||||||||    
T  46817437 gttaacatgcgtaggggcattttgaacatttactttaagaatgagc 46817482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 24974151 - 24974199
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaa 146  Q
    ||||||||||||||||| |||| |  | |||||||||||||||||||||    
T  24974151 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcaaa 24974199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 53265865 - 53265809
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttg 154  Q
    ||||||||||||||| | |||||| | ||||||||| ||||||||| ||||| ||||    
T  53265865 gttaacatgcgtaggagcattttggaattttactttaggaatgagcgaaaccatttg 53265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 18085647 - 18085702
Alignment:
Q  139 tgagcaaaaccgtttgcgtaaagaggagaattcttattttatttgtctgtgctgct 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18085647 tgagcaaaaccgtttgcgtaaagaggagaattcttattttatttgtctgtggtgct 18085702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 806623 - 806543
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 173  Q
    ||||||||||||| |||||| |||||||  || ||||||||| ||||||||||||| ||||| |||||||| |||||||||    
T  806623 cgtgagttaacatacgtaggagtattttagacatttactttgagaatgagcaaaactgtttgggtaaagagcagaattctt 806543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 14431474 - 14431553
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||||||||||||  |||||| | |||||||| |||||||| ||||||| |||||||||||| |||||||| ||||||||    
T  14431474 cgtgagttaacatatgtagggatgttttgaacatttactttaggaatgaacaaaaccgtttgtgtaaagagtagaattct 14431553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 14153427 - 14153353
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||| | |||| |||| ||| ||||||||    
T  14153427 gttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaattct 14153353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 7203953 - 7204005
Alignment:
Q  95 tgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaa 147  Q
    |||||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  7203953 tgagttaacatgcgtaggggtattttgatcatttactttgggaacgagcaaaa 7204005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 14431022 - 14430943
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||||||||||||||||||||  ||||| ||| |||||||| | |||||||| ||||||||  ||||| || ||||||||    
T  14431022 cgtgagttaacatgcgtagggacattttaaacatttactttagaaatgagcagaaccgtttaggtaaatagcagaattct 14430943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 2559616 - 2559699
Alignment:
Q  90 taacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 173  Q
    ||||||||||||||   |||||| | | | ||||| ||||||||||||| |||||||| |||||| |||||||| | |||||||    
T  2559616 taacgtgagttaactcacgtaggagcaatatgaacatttactttgggaacgagcaaaatcgtttgggtaaagagcaaaattctt 2559699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 17436110 - 17436064
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    ||||||||||||||| || |||||  |||||||||||||||||||||    
T  17436110 agttaacatgcgtagaggcattttagacttttactttgggaatgagc 17436064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 23608503 - 23608457
Alignment:
Q  95 tgagttaacatgcgtaggggtattttgaacttttactttgggaatga 141  Q
    ||||||||||||||||||| ||||||  ||||||| |||||||||||    
T  23608503 tgagttaacatgcgtagggatattttagacttttattttgggaatga 23608457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 32274257 - 32274212
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    ||||||||||||||||| |||| || | ||||||||||||||||||    
T  32274257 gttaacatgcgtaggggcatttcgatcatttactttgggaatgagc 32274212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 35060900 - 35060945
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    ||||||||||||||||| |||||| || |||||||||| |||||||    
T  35060900 gttaacatgcgtaggggcattttggacatttactttggaaatgagc 35060945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 23608981 - 23609045
Alignment:
Q  95 tgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 159  Q
    |||||||||||||  ||| |||||||||||||||| ||| |||||||| | |||| |||| ||||    
T  23608981 tgagttaacatgcagaggagtattttgaacttttattttaggaatgagaagaaccatttgagtaa 23609045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 25400897 - 25400861
Alignment:
Q  107 cgtaggggtattttgaacttttactttgggaatgagc 143  Q
    |||||||||||||||||| |||||||||| |||||||    
T  25400897 cgtaggggtattttgaacatttactttggaaatgagc 25400861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 26009448 - 26009369
Alignment:
Q  92 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    |||||||||||||||||||||  |||||||  | |||||||||||||||||||||| |||||| |||||||| |||||||    
T  26009448 acgtgagttaacatgcgtaggaatattttggtcatttactttgggaatgagcaaaatcgtttgggtaaagagcagaattc 26009369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 26604172 - 26604248
Alignment:
Q  92 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaa 168  Q
    |||| |||||||||||||||||| ||||| ||||||||||||| ||||||||  |||| |||| |||| ||| ||||    
T  26604172 acgtaagttaacatgcgtaggggcattttaaacttttactttgagaatgagcggaaccatttgagtaatgagcagaa 26604248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 38790958 - 38790883
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgg-gaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||| ||||| ||||  ||| ||| ||||||||    
T  38790958 gttaacatgcgtaggggtattttggacttttactttggaaaatgagcgaaaccatttggataatgagcagaattct 38790883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 26011952 - 26012034
Alignment:
Q  92 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 174  Q
    |||| ||||||||||| ||| |||||||||  | ||||||||| ||||||  |||| |||||| |||||||| ||||||||||    
T  26011952 acgtaagttaacatgcatagaggtattttggtcatttactttgagaatgattaaaatcgtttgggtaaagagcagaattctta 26012034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 28138820 - 28138758
Alignment:
Q  110 aggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    ||||||||||||  | |||||||||||||||||||||| | |||| |||||||| ||||||||    
T  28138820 aggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaaagagcagaattct 28138758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 42548216 - 42548158
Alignment:
Q  116 attttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 174  Q
    |||||| ||||||||||||||||||||||||||  |||| |||| ||| ||||||||||    
T  42548216 attttggacttttactttgggaatgagcaaaacgatttgggtaatgagcagaattctta 42548158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 25428776 - 25428727
Alignment:
Q  126 tttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttat 175  Q
    ||||||||||||||||||| ||||||||| |||||||| | |||||||||    
T  25428776 tttactttgggaatgagcagaaccgtttgggtaaagagcaaaattcttat 25428727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 48221703 - 48221746
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatga 141  Q
    |||| ||||||||||||||||||| || ||||||||||||||||    
T  48221703 gttagcatgcgtaggggtattttggacatttactttgggaatga 48221746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 20379680 - 20379718
Alignment:
Q  105 tgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  20379680 tgcgtaggggcattttggacttttactttgggaatgagc 20379718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 1537251 - 1537324
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||| ||||| ||||||||| ||||||||| |||||| | | || ||||| |||| ||| |||||||    
T  1537251 gttaacatgcgcaggggcattttgaacatttactttgagaatgaacgatactgtttgggtaatgagcagaattc 1537324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 37260913 - 37260995
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttat 175  Q
    ||||||||||||||| |||||| |||||| || ||||||||| ||||| ||||||||||||| |||||||| | |||||||||    
T  37260913 cgtgagttaacatgcataggggcattttggacatttactttgagaatgggcaaaaccgtttgggtaaagagcataattcttat 37260995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 35392105 - 35392174
Alignment:
Q  94 gtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagag 163  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||  |||| ||||||||    
T  35392105 gtgagttaacatgcgtagaagtattttgaacatttactttgggaatgagcaaaacaatttgggtaaagag 35392174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 45688381 - 45688325
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttg 154  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  45688381 gttaacatgcgtaggggcattttgaacttttactttgggaatgagcagaaccatttg 45688325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 28442996 - 28442950
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  28442996 agttaacatgcgtaggggcattttcaacttttactttgggaatgagc 28442950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 5119028 - 5119109
Alignment:
Q  90 taacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||||| ||| ||||  |||||||  || |||||||| ||||||||||||||||||||  ||||||| |||||||    
T  5119028 taacgtgagttaatatgtgtagcagtattttagacatttactttaggaatgagcaaaaccgtttggataaagagcagaattc 5119109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 45691053 - 45691114
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 159  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||| ||||    
T  45691053 gttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaa 45691114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 45691196 - 45691256
Alignment:
Q  99 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 159  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||| ||||    
T  45691196 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaa 45691256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 45691338 - 45691398
Alignment:
Q  99 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 159  Q
    |||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||| ||||    
T  45691338 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaa 45691398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 35391556 - 35391505
Alignment:
Q  90 taacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatga 141  Q
    ||||||||||||||||||||| | |||||||| || ||||||||||||||||    
T  35391556 taacgtgagttaacatgcgtatgagtattttggacatttactttgggaatga 35391505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 3792633 - 3792560
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||||| ||| |||||| ||||||||||||| ||||||| ||||  |||| |||| ||| |||||||    
T  3792633 gttaacatgcgtaagggcattttggacttttactttggaaatgagcgaaactatttgggtaatgagcagaattc 3792560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 39650269 - 39650196
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||||||||| |||||| || |||||||| ||||||||| ||||| |||  |||| ||| |||||||    
T  39650269 gttaacatgcgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaattc 39650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 2093889 - 2093837
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttggg-aatgagca 144  Q
    ||||||||||||||||||||||||||||| || |||| |||||| ||||||||    
T  2093889 cgtgagttaacatgcgtaggggtattttggacatttattttgggtaatgagca 2093837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 33403130 - 33403206
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 173  Q
    |||||||||||||||||| |||||  ||||||||||||| ||||||| | || ||||| |||| ||| | |||||||    
T  33403130 agttaacatgcgtaggggcattttcgacttttactttggaaatgagcgatactgtttgggtaatgagcataattctt 33403206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 11821239 - 11821160
Alignment:
Q  92 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    |||| ||||||||||| |||| | |||||| ||||||||||||||||||| | ||||| ||||  ||| ||| |||||||    
T  11821239 acgtaagttaacatgcataggagcattttggacttttactttgggaatgaacgaaaccatttggataatgagcagaattc 11821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 48025630 - 48025555
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||||||||||||| ||| ||||| ||||| |||||||||||||||| | || ||||| |||| ||| | ||||||    
T  48025630 agttaacatgcgtaagggcattttcaacttctactttgggaatgagcgatactgtttgggtaacgagcataattct 48025555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 5602989 - 5602944
Alignment:
Q  126 tttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||||||||||||| || |||| |||||||| |||||||    
T  5602989 tttactttgggaatgagcaaatccatttgggtaaagagcagaattc 5602944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 42883159 - 42883106
Alignment:
Q  120 tgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 173  Q
    ||||| |||||||| || ||||||||||| ||||| |||||||| |||||||||    
T  42883159 tgaacatttactttaggtatgagcaaaactgtttgggtaaagagcagaattctt 42883106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 50069239 - 50069284
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    ||||||||||| ||||| |||||| || ||||||||||||||||||    
T  50069239 gttaacatgcgcaggggcattttggacatttactttgggaatgagc 50069284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 42883754 - 42883810
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaacc 149  Q
    |||||||||||||| |||||| ||||||| || |||| ||| | |||||||||||||    
T  42883754 cgtgagttaacatgtgtagggatattttggacatttattttagaaatgagcaaaacc 42883810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 24369 - 24454
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttattttattt 182  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||| | || ||||| |||| ||| ||||||||| | ||||||    
T  24369 agttaacatgcgtaggggcattttaaacttttactttgggaatgagcgatactgtttgagtaatgagcagaattcttttattattt 24454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 33220792 - 33220865
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||| |||| |||| ||| |||||||    
T  33220792 gttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggtaatgagcagaattc 33220865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 24899066 - 24899145
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||||||||||||||||||| ||||||||  | |||||| ||||||||| |||||  ||||| |||||||| ||||||||    
T  24899066 cgtgagttaacatgcgtaggagtattttggtcatttactctgggaatgaacaaaagtgtttgggtaaagagtagaattct 24899145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 5967242 - 5967322
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttatttt 178  Q
    ||||||||||||||||| |||| || | |||||||||||||||||| || || |||| |||| ||| |||||||| |||||    
T  5967242 gttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattctaatttt 5967322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 1349220 - 1349299
Alignment:
Q  94 gtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 173  Q
    ||||||||||||||||| ||||||||||  | |||  || |||||||||||||| | |||| |||||||| |||||||||    
T  1349220 gtgagttaacatgcgtaagggtattttggtcatttcattcgggaatgagcaaaaacttttgggtaaagagcagaattctt 1349299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 43640977 - 43641051
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    |||||||||||||||||| | ||||| | |||||||||| ||||||| ||||| |||| |||| ||| |||||||    
T  43640977 agttaacatgcgtaggggcaatttgatcatttactttggaaatgagccaaaccatttgggtaatgagcagaattc 43641051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 14087850 - 14087922
Alignment:
Q  99 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    |||| ||||||||||| ||||  ||| |||| |||| ||||||| ||||||||||| |||||||| |||||||    
T  14087850 ttaatatgcgtaggggcatttcaaacatttattttgagaatgagtaaaaccgtttgagtaaagagcagaattc 14087922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 23558982 - 23559062
Alignment:
Q  92 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||| |||||||||||||||||| |||||| |||||||| |||| |||||||  |||| ||||  ||| ||| ||||||||    
T  23558982 acgtaagttaacatgcgtaggggcattttggacttttaccttggcaatgagcggaaccatttggataatgagcagaattct 23559062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 26229068 - 26229116
Alignment:
Q  123 acttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||||||||||| |||||| ||||| |||||||| |||||||    
T  26229068 acttttactttgggaatgaacaaaacagtttgggtaaagagcagaattc 26229116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 37686664 - 37686613
Alignment:
Q  123 acttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 174  Q
    ||||||||||||||||||| | ||||  |||| |||||||||||||||||||    
T  37686664 acttttactttgggaatgaacgaaacgatttgggtaaagaggagaattctta 37686613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 35841469 - 35841396
Alignment:
Q  99 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    ||||||||||||||| ||||||| || ||||||||   |||||||| ||| ||||  |||||||| ||||||||    
T  35841469 ttaacatgcgtagggatattttggacatttactttaaaaatgagcacaactgttttggtaaagagcagaattct 35841396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 19866807 - 19866722
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttattttattt 182  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||| | || ||||| |||| ||| ||||||||||| ||||||    
T  19866807 agttaacatgcgtaggggcatttttgacttttactttgggaatgagcgatactgtttgggtaatgagcagaattcttatcttattt 19866722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 6162687 - 6162760
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||  |||| |||| |||| ||| |||||||    
T  6162687 gttaacatgcgtaggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 6162760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 30533880 - 30533956
Alignment:
Q  95 tgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    |||||||||||| |||||||||||||| |  |||||||||  |||||||||||||||| | |||||||| |||||||    
T  30533880 tgagttaacatgtgtaggggtattttggatatttactttgaaaatgagcaaaaccgttcgagtaaagagcagaattc 30533956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 54528956 - 54529034
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    |||||||||||||| |||||||||||||| || ||||| ||| |||||||||||| | |||  |||||||| |||||||    
T  54528956 cgtgagttaacatgtgtaggggtattttggacatttacattgagaatgagcaaaatcattttggtaaagagcagaattc 54529034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 2652934 - 2652991
Alignment:
Q  91 aacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaac 148  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||  |||||||    
T  2652934 aacgtgaattaacatgcgtaggggtattttgatcatttactttgggaataggcaaaac 2652991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 53814567 - 53814640
Alignment:
Q  99 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||||||||||||||| ||||||| | |||||||||||||||||| || || |||| |||| ||| ||||||||    
T  53814567 ttaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattct 53814640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 3539748 - 3539676
Alignment:
Q  91 aacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagag 163  Q
    |||||||||||||||| |||||| |||||||| | |||| ||||| ||||||||||||| ||||  |||||||    
T  3539748 aacgtgagttaacatgtgtagggctattttgatcatttattttggaaatgagcaaaaccatttggataaagag 3539676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 47064943 - 47064891
Alignment:
Q  92 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagca 144  Q
    |||| |||||||||||||||| | |||||| ||||||||||||||||||||||    
T  47064943 acgtaagttaacatgcgtaggagcattttggacttttactttgggaatgagca 47064891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 50663954 - 50663874
Alignment:
Q  92 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    ||||||||||||||||||||||| ||||||    |||||||||||||||||| ||| | |||| || ||||| ||||||||    
T  50663954 acgtgagttaacatgcgtaggggcattttggttatttactttgggaatgagcgaaatcatttgggtgaagagcagaattct 50663874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 8150245 - 8150178
Alignment:
Q  95 tgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaaga 162  Q
    ||||||||||| |||||||||||||||  |  || |||||||||||||||||| |||||| |||||||    
T  8150245 tgagttaacatacgtaggggtattttggtcagtttctttgggaatgagcaaaaacgtttgggtaaaga 8150178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 40517534 - 40517601
Alignment:
Q  104 atgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    |||||||||||||| |||  | |||||||| ||||||||| |||||||||| |||||||| |||||||    
T  40517534 atgcgtaggggtatcttggtcatttactttaggaatgagcgaaaccgtttgggtaaagagcagaattc 40517601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 4969939 - 4969869
Alignment:
Q  107 cgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttattt 177  Q
    ||||||||||||||  |||||||||||||||||||||  |||| |||| |||| ||| |||||||| ||||    
T  4969939 cgtaggggtattttcgacttttactttgggaatgagcggaaccatttgggtaatgagcagaattctaattt 4969869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 15042010 - 15042056
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||    
T  15042010 agttaacatgcgtaggggcattttcgacttttactttgggaatgagc 15042056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 34086844 - 34086890
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||    
T  34086844 agttaacatgcgtaggggcattttcgacttttactttgggaatgagc 34086890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 35995210 - 35995137
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||| ||||| ||||| ||||||||||||| ||| ||||| |||| |||| |||| ||| |||||||    
T  35995210 gttaacatgcgaaggggcattttaaacttttactttgcgaaggagcagaaccatttgggtaatgagtagaattc 35995137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 39688756 - 39688833
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 174  Q
    |||||||||| |||||||||||||  |||||||||||| |||||||||| || ||||  ||||  || ||||||||||    
T  39688756 agttaacatgtgtaggggtattttcgacttttactttgagaatgagcaatactgtttaagtaatcagcagaattctta 39688833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 53827666 - 53827711
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||    
T  53827666 gttaacatgcgtaggggcattttggacatttactttgggaatgagc 53827711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 7666966 - 7667041
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||||||||||||||||| |||||  ||||||| ||||||||||||| | || ||||| |||| ||| | ||||||    
T  7666966 agttaacatgcgtaggggcatttttgacttttattttgggaatgagcgatactgtttgggtaatgagcaaaattct 7667041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 44833543 - 44833464
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttattt 177  Q
    ||||| ||||||||||| |||||| ||||||||||||| ||| | |  |||| |||| |||| ||| |||||||||||||    
T  44833543 gttaatatgcgtaggggcattttggacttttactttggaaataaacggaaccatttgggtaatgagcagaattcttattt 44833464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 2325566 - 2325608
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatg 140  Q
    ||||||||||||||||  ||||| |||||||||||||||||||    
T  2325566 gttaacatgcgtagggacattttaaacttttactttgggaatg 2325608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 11342962 - 11342920
Alignment:
Q  99 ttaacatgcgtaggggtattttgaacttttactttgggaatga 141  Q
    ||||||||||||||||  ||||| |||||||||||||||||||    
T  11342962 ttaacatgcgtaggggctttttggacttttactttgggaatga 11342920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 15040754 - 15040674
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttatttt 178  Q
    ||||||||||||||||| ||||    | |||||||||||||||||| || || |||| |||| ||| ||||||||| ||||    
T  15040754 gttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattcttttttt 15040674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 26998287 - 26998367
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 173  Q
    |||||||||||||| |||||| |||||||| | |||| ||| | ||||||| ||||| ||||  | ||||| |||||||||    
T  26998287 cgtgagttaacatgtgtagggatattttgatcatttattttagaaatgagcgaaaccatttggatgaagagcagaattctt 26998367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 42947448 - 42947404
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgag 142  Q
    ||||||||||||||| | |||||| |||||||||||| |||||||    
T  42947448 gttaacatgcgtaggagcattttggacttttactttgagaatgag 42947404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 44430465 - 44430417
Alignment:
Q  124 cttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||||||||||||||||||||||||| ||||  ||| ||| ||||||||    
T  44430465 cttttactttgggaatgagcaaaaccatttggataatgagcagaattct 44430417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 53101163 - 53101235
Alignment:
Q  99 ttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    |||||||||||| ||||| |||   | |||||||||| |||||||||||  ||||| |||||||| |||||||    
T  53101163 ttaacatgcgtaagggtaatttcgtcatttactttggaaatgagcaaaaatgtttgggtaaagagtagaattc 53101235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 37893007 - 37893074
Alignment:
Q  92 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 159  Q
    |||| ||||||||||| |||||| |||||| ||||||||||||||||||||| ||||| |||| ||||    
T  37893007 acgtaagttaacatgcataggggcattttggacttttactttgggaatgagcgaaaccatttgggtaa 37893074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 2675233 - 2675142
Alignment:
Q  84 gaaagttaacgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttat 175  Q
    ||||| || |||||||||||||| |||||| |||||||| | ||||||||| ||| || ||||||  ||||  ||||||| |||||||||||    
T  2675233 gaaagctagcgtgagttaacatgggtagggctattttgatcatttactttgagaacgaacaaaactatttgaataaagagcagaattcttat 2675142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 11713031 - 11712980
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaacc 149  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||| |||||    
T  11713031 gttaacatacgtaggggcattttggacttttactttgggaatgagcgaaacc 11712980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 12967344 - 12967267
Alignment:
Q  98 gttaacatgcgtaggggtattttgaac-ttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 174  Q
    |||||||||||||||||||||||| || |||||||||| ||||||||  |||| |||  |||| ||| ||||||||||    
T  12967344 gttaacatgcgtaggggtattttggactttttactttgagaatgagcggaaccatttaggtaatgagcagaattctta 12967267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 12969269 - 12969306
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgg 135  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  12969269 gttaacatgcgtaggggcattttgaacttttactttgg 12969306  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 22787999 - 22788063
Alignment:
Q  107 cgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    |||||||||||||||  | |||||||||||||||| |||| || |||| |||||||| |||||||    
T  22787999 cgtaggggtattttggtcatttactttgggaatgaacaaatccatttgggtaaagagcagaattc 22788063  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 11573707 - 11573661
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    ||||||||| |||||||| |||||  |||||||||||||||||||||    
T  11573707 agttaacatacgtaggggcatttttgacttttactttgggaatgagc 11573661  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 8273318 - 8273245
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||||||||| |||| |  | |||||||||||||||||| || || |||| |||| ||| |||||||    
T  8273318 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 8273245  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 18387314 - 18387241
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||||||||||| ||| |||||  |  ||||||||||||||||||| |||| |||| |||| ||| |||||||    
T  18387314 gttaacatgcgtaagggcatttttgatatttactttgggaatgagcagaaccatttgagtaatgagcagaattc 18387241  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 20685070 - 20685001
Alignment:
Q  107 cgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattcttatt 176  Q
    |||| |||||||||  |||||||||||| ||||||||  |||| |||| |||| ||| ||||||||||||    
T  20685070 cgtaagggtattttagacttttactttgagaatgagcggaaccatttgggtaatgagcagaattcttatt 20685001  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 12965127 - 12965047
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 173  Q
    |||||||||||   |||||| | ||||||| | |||||||||  |||||||| || |||||| |||||||| |||||||||    
T  12965127 cgtgagttaactcacgtaggagcattttgatcatttactttgaaaatgagcagaaacgtttgggtaaagagcagaattctt 12965047  T

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Target: scaffold0262 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 8462 - 8384
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    |||||||||||||||||| |||||||||  || |||||||| | |||||||| || |||||| |||||||| |||||||    
T  8462 cgtgagttaacatgcgtaagggtattttacacatttactttagaaatgagcagaaacgtttgggtaaagagcagaattc 8384  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 17644600 - 17644650
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||||    
T  17644600 cgtgaattaacatgcgtaggggtattttggacatttactttgggaatgagc 17644650  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 1145219 - 1145158
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttg 154  Q
    ||||||||||||||||||| || ||||||  | |||||||||||||||||| |||| |||||    
T  1145219 cgtgagttaacatgcgtagaggcattttggtcatttactttgggaatgagcgaaactgtttg 1145158  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 7335611 - 7335550
Alignment:
Q  93 cgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttg 154  Q
    ||||||||||||||  |||||||||||||  | |||| ||| ||||||||||||||||||||    
T  7335611 cgtgagttaacatgtataggggtattttggtcatttattttaggaatgagcaaaaccgtttg 7335550  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 16879875 - 16879943
Alignment:
Q  96 gagttaacatgcgta-ggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagag 163  Q
    ||||||||||||||| ||||||||||| |  |||||||| |||||| ||||||| ||||| ||||||||    
T  16879875 gagttaacatgcgtaaggggtattttggatatttactttaggaatgtgcaaaacagtttgggtaaagag 16879943  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 3758973 - 3758922
Alignment:
Q  120 tgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattc 171  Q
    ||||| ||||||||||||||||| ||||||||||  |||||||| |||||||    
T  3758973 tgaacatttactttgggaatgagtaaaaccgttttggtaaagagcagaattc 3758922  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 11135815 - 11135740
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattct 172  Q
    |||||||||||||||||||||||||  | |||| ||||| ||||||| ||| | |||| |||||||| | ||||||    
T  11135815 agttaacatgcgtaggggtattttggtcatttattttggaaatgagcgaaatcatttgggtaaagagcataattct 11135740  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 30489796 - 30489753
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatga 141  Q
    ||||||||||||||||| |||||  |||||||||||||||||||    
T  30489796 gttaacatgcgtaggggcattttcgacttttactttgggaatga 30489753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 30491799 - 30491845
Alignment:
Q  97 agttaacatgcgtaggggtattttgaacttttactttgggaatgagc 143  Q
    |||||||||||||||||  |||||  |||||||||||||||||||||    
T  30491799 agttaacatgcgtagggacattttcgacttttactttgggaatgagc 30491845  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 19402004 - 19402065
Alignment:
Q  98 gttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaa 159  Q
    ||||||||||||| ||| |||||| |||||||||||| |||||||  ||||| |||| ||||    
T  19402004 gttaacatgcgtatgggcattttggacttttactttgagaatgagtgaaaccatttgggtaa 19402065  T

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Target: scaffold0163 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 35843 - 35773
Alignment:
Q  104 atgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctta 174  Q
    ||||||||||| |||||| || ||||||||| ||||||||||||  |||||  ||||||| ||||||||||    
T  35843 atgcgtaggggcattttggacatttactttgagaatgagcaaaattgtttggttaaagagcagaattctta 35773  T

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Target: scaffold1763 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 363 - 444
Alignment:
Q  92 acgtgagttaacatgcgtaggggtattttgaacttttactttgggaatgagcaaaaccgtttgcgtaaagaggagaattctt 173  Q
    |||| ||||||||||| || ||| |||| | | ||||||||||||||||||| ||||| |||| |||||||| | |||||||    
T  363 acgtaagttaacatgcataagggcatttgggatttttactttgggaatgagcgaaaccatttgggtaaagagcataattctt 444  T

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