View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18357_low_3 (Length: 494)
Name: NF18357_low_3
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18357_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 12 - 480
Target Start/End: Original strand, 22217399 - 22217867
Alignment:
| Q |
12 |
agagaacgagtgagtgaagagaataggctcaaacactaacagaaagtcttgtacctctgaaattctttgatcaaaattgttcctgcataagcaaaatacc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22217399 |
agagaacgagtgagtgaagagaataggctcaaacactaagagaaagtcttgtacctctgaaattctttgatcaaaattgttcctgcataagcaaaatacc |
22217498 |
T |
|
| Q |
112 |
aaatatagagagaacaacatacgatagttataataaatcaaggaaacaatagggagaacatgtataaaattttgtccatgactagtgtatgcacattnnn |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22217499 |
aaatatagagagaacaacatacgatagttataataaatcaaggaaacaatagggagaacatgtataaaattttgtccatgactagtgtatgcacattaaa |
22217598 |
T |
|
| Q |
212 |
nnnnntgaatgcaatatacctaagtatttgaacagagttatgcatgtccatattcactaaattagcattatattatgacatgtgtagtggtaggaattgt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22217599 |
aaaaatgaatgcaatatacctaagtatttgaacagagttatgcatgtccatattcactaaattagcattatattatgacatgtgtagtggtaggaattgt |
22217698 |
T |
|
| Q |
312 |
tctaaaataaaggccatttctaaaacaatctaggcatgatatacctacaggatttgccaaagatttctcatactcctcgtatgtgtaccatgttatgtca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22217699 |
tctaaaataaaggccatttctaaaacaatctaggcatgatatacctacaggatttgccaaagatttctcatactcctcgtatgtgtaccatgttatgtca |
22217798 |
T |
|
| Q |
412 |
atagactgcatcaaagcatataaacaaacattaaatcatgtgagtagaagatatatacaagagaatagt |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22217799 |
atagactgcatcaaagcatataaacaaacattaaatcatgtgagtagaagatatatacaagagaatagt |
22217867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 352 - 452
Target Start/End: Original strand, 38756422 - 38756522
Alignment:
| Q |
352 |
atacctacaggatttgccaaagatttctcatactcctcgtatgtgtaccatgttatgtcaatagactgcatcaaagcatataaacaaacattaaatcatg |
451 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38756422 |
atacctacaggatttgccaaatatttctcatactcctcgtccgtgtatcttgttatgtcaacagactgcatcaaagcaagtaaacaaacattaaatcatg |
38756521 |
T |
|
| Q |
452 |
t |
452 |
Q |
| |
|
| |
|
|
| T |
38756522 |
t |
38756522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University