View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18357_low_5 (Length: 477)
Name: NF18357_low_5
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18357_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Original strand, 36952477 - 36952924
Alignment:
| Q |
12 |
tatacatacactcactctctcataatatttctatccaccacctgctcctttaatcacacaaaaatgttcactccatctcttcaaattttctcactaaann |
111 |
Q |
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| T |
36952477 |
tatacatacacccactctctcataatatttctatccaccacctgctcctttaatcacacaaaaatgttcactccatctcttcaaattttctcactaaaat |
36952576 |
T |
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| Q |
112 |
nnnnnnnnnnnnnnnnttcaaatttaacctcaatcaaactcaaaagaattatccacaccctcttagtttcacacttgtgtagaataattcgtgcactatc |
211 |
Q |
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| T |
36952577 |
catcatcatcatcatcttcaaatttaacctcaatcaaactcaaaagaattatccacaccctcttagtttcacacttgtgtagaataattcgtgcactatc |
36952676 |
T |
|
| Q |
212 |
caaagtcaaagattttatagttgagattctcaaagacgacaacaactcaaccatcaacttcacttattacccttcctctcacaaaaaacgtaacaacata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36952677 |
caaagtcaaagattttatagttgagattctcaaagacgacaacaactcaaccatcaacttcacttattacccttcctctcacaaaaaacgtaacaacata |
36952776 |
T |
|
| Q |
312 |
agaaaaaagatcattttaggttcctttagacttcattataattggtgttcttcaaaatcttctcatgttttaccggttccggaacgggtttatgaaggtt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36952777 |
agaaaaaagatcattttaggttcctttagacttcattataattggtgttcttcaaaatcttctcatgttttgccggttccggaacgggtttatgaaggtt |
36952876 |
T |
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| Q |
412 |
tgtttgatacttcagagcagccaaaaagtgaggattgtcctgactcac |
459 |
Q |
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| T |
36952877 |
tgtttgatacttcagagcagccaaaaagtgaggattgtcctgactcac |
36952924 |
T |
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