View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18357_low_6 (Length: 476)
Name: NF18357_low_6
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18357_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 5 - 461
Target Start/End: Complemental strand, 41707099 - 41706643
Alignment:
| Q |
5 |
ttttttaatttgtgattgaccttgcttatatgaaggggatggtttcttgtacttgttctaattttggatagtggataatatgcatggttcaatttgttgt |
104 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41707099 |
ttttttaatttgtgattgagcttgcttatatgaaggggatggtttcttgtacttgttctaactttggatagtggataatatgcatggttcaatttgttgt |
41707000 |
T |
|
| Q |
105 |
tgattgtttctataggaacaaatggcaacacaatacacagcaaagagaaaaaaggttgccaccaacccatcatttagcaactttgacaacttccacttca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41706999 |
tgattgtttctataggaacaaatggcaacacaatacacagcaaagagaaaaaaggttgccaccaacccatcatttagcaactttgacaacttccacttca |
41706900 |
T |
|
| Q |
205 |
catcatcggttcatcaagagcgctattctgagtttctggccaacaaaaagtttgtggaagnnnnnnntttccggttggaagggaacaaattcttagatat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41706899 |
catcatcggttcatcaagagcgctattctgagtttctggccaacaaaaagtttgtggaagaaaaaaatttccggttggaagggaacaaattcttagatat |
41706800 |
T |
|
| Q |
305 |
ccaagtaatgatagtgtccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgacattagctaaagagttctttgcaaatgcatatcag |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706799 |
ccaagtaatgatagtgtccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgacattagctaaagagttctttgcaaatgcatatcag |
41706700 |
T |
|
| Q |
405 |
ggccctgctaagaatgagcgaatgaaattcactagttttatcagagggaagaatgtt |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41706699 |
ggccctgctaagaatgagcgaatgaaattcactagttttatcagagggaagaatgtt |
41706643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 71 - 457
Target Start/End: Complemental strand, 41716836 - 41716450
Alignment:
| Q |
71 |
gatagtggataatatgcatggttcaatttgttgttgattgtttctataggaacaaatggcaacacaatacacagcaaagagaaaaaaggttgccaccaac |
170 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | ||||||| |||||| ||||||| ||| |
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|
| T |
41716836 |
gatagtggatactatgcatggttcaatttgttgttgattgtttttataggaacaaatggcaacacaaaacgaaccaaagaggaaaaagtttgccacgaac |
41716737 |
T |
|
| Q |
171 |
ccatcatttagcaactttgacaacttccacttcacatcatcggttcatcaagagcgctattctgagtttctggccaacaaaaagtttgtggaagnnnnnn |
270 |
Q |
| |
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|||||| ||| |||||||||| |||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| || |
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| T |
41716736 |
gcatcatctagtgactttgacaaattccacttcacatcattggttcatcaaaagcgttattctgagtttctggccaacaaaaagtttgtgggagaaaaca |
41716637 |
T |
|
| Q |
271 |
ntttccggttggaagggaacaaattcttagatatccaagtaatgatagtgtccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgac |
370 |
Q |
| |
|
||||| ||||||||||| |||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716636 |
atttccagttggaagggagcaaattctcgtgtattcataaaatgatagaatccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgac |
41716537 |
T |
|
| Q |
371 |
attagctaaagagttctttgcaaatgcatatcagggccctgctaagaatgagcgaatgaaattcactagttttatcagagggaagaa |
457 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
41716536 |
aatagctaaagagttctttgcaaatgcatatcagggtcctgctaagaatgatcgaatgaaattcactagttttgtcagagggaagaa |
41716450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 97 - 401
Target Start/End: Complemental strand, 41665794 - 41665490
Alignment:
| Q |
97 |
tttgttgttgattgtttctataggaacaaatggcaacacaatacacagcaaagagaaaaaaggttgccaccaacccatcatttagcaactttgacaactt |
196 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| | || | |||| |||||||||||| |
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|
| T |
41665794 |
tttgttgttgattgttttggtaggaacaaatggcaacacaaaacaaagcaaagagaaaaaaggttgccaccaacgcctcgtctagctcctttgacaactt |
41665695 |
T |
|
| Q |
197 |
ccacttcacatcatcggttcatcaagagcgctattctgagtttctggccaacaaaaagtttgtggaagnnnnnnntttccggttggaagggaacaaattc |
296 |
Q |
| |
|
|| |||| |||| ||| ||||||||||||||||| ||||||| ||||||||||||||||| || |||| ||||||||||| |||||||| |
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|
| T |
41665694 |
tcatttcatatcaatggtccatcaagagcgctattcgaagtttctaaccaacaaaaagtttgtgttagaaaaaaatttctggttggaaggggacaaattc |
41665595 |
T |
|
| Q |
297 |
ttagatatccaagtaatgatagtgtccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgacattagctaaagagttctttgcaaatg |
396 |
Q |
| |
|
| |||||| || | |||||||||| |||||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
41665594 |
tcagatattcaggcaatgatagtggccagaggatggggcaaattgacatcatttgcaaaagaggctagtgcgacattagctaaagagttctttgcaaatg |
41665495 |
T |
|
| Q |
397 |
catat |
401 |
Q |
| |
|
||||| |
|
|
| T |
41665494 |
catat |
41665490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 97 - 415
Target Start/End: Complemental strand, 41657034 - 41656715
Alignment:
| Q |
97 |
tttgttgttgattgtttctataggaacaaatggcaacacaatacacagcaaagagaaaaaa-ggttgccaccaacccatcattta-gcaactttgacaac |
194 |
Q |
| |
|
|||||| |||| ||||| | |||||||||||||||| ||| ||| |||||||| |||||| ||||||||||||| || | || || |||||||| |
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|
| T |
41657034 |
tttgttcttgactgtttttgtaggaacaaatggcaagccaaaacaaagcaaagataaaaaaaggttgccaccaacgtctcgtctaagctcttttgacaat |
41656935 |
T |
|
| Q |
195 |
ttccacttcacatcatcggttcatcaagagcgctattctgagtttctggccaacaaaaagtttgtggaagnnnnnnntttccggttggaagggaacaaat |
294 |
Q |
| |
|
|| ||||||| ||||| ||| |||||||||| |||||| ||||||||||||||||||||||||| || |||| |||||||||| |||||| |
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|
| T |
41656934 |
tttcacttcatatcattggtccatcaagagcactattcgaagtttctggccaacaaaaagtttgtattagaaaaaaaattccagttggaagggtacaaat |
41656835 |
T |
|
| Q |
295 |
tcttagatatccaagtaatgatagtgtccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgacattagctaaagagttctttgcaaa |
394 |
Q |
| |
|
||| |||||| || | |||||||||| |||||||||||| ||| ||||| | ||||||||||| |||||| | ||||||||||||||||||||||||| |
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|
| T |
41656834 |
tctcagatattcaggaaatgatagtgaccagaggatggggggatctgacaacatttgcaaaagaggctagtgc-ccattagctaaagagttctttgcaaa |
41656736 |
T |
|
| Q |
395 |
tgcatatcagggccctgctaa |
415 |
Q |
| |
|
|||||||| ||| |||||||| |
|
|
| T |
41656735 |
tgcatatctgggtcctgctaa |
41656715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 41648724 - 41648624
Alignment:
| Q |
315 |
atagtgtccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgacattagctaaagagttctttgcaaatgcatatcagggccctgcta |
414 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| | ||||| |||| ||| |||| ||||| |||||||| || | |||||||||||||||||| ||| ||| |
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|
| T |
41648724 |
atagtggccagaggatgagtggaattgacatagcttgcagaagaggcttgtacaacatttgctaaagaattgtctgcaaatgcatatcagggtcctacta |
41648625 |
T |
|
| Q |
415 |
a |
415 |
Q |
| |
|
| |
|
|
| T |
41648624 |
a |
41648624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 41648899 - 41648834
Alignment:
| Q |
92 |
ttcaatttgttgttgattgtttctataggaacaaatggcaacacaatacacagcaaagagaaaaaa |
157 |
Q |
| |
|
||||||||||||| ||||||| | |||| ||||||| |||| ||| ||| ||||||||||||||| |
|
|
| T |
41648899 |
ttcaatttgttgtcaattgtttttgtagggacaaatgacaactcaaaacaaagcaaagagaaaaaa |
41648834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 97 - 401
Target Start/End: Original strand, 2440073 - 2440377
Alignment:
| Q |
97 |
tttgttgttgattgtttctataggaacaaatggcaacacaatacacagcaaagagaaaaaaggttgccaccaacccatcatttagcaactttgacaactt |
196 |
Q |
| |
|
|||| |||||| ||||| | |||||||||||||||| |||| ||| |||||||| |||| |||| | ||||| | |||| |||| ||||||| || |
|
|
| T |
2440073 |
tttgctgttgactgtttttgtaggaacaaatggcaaaacaaaacaatgcaaagaggaaaagggttatcgccaacacctcatctagctcatttgacagttt |
2440172 |
T |
|
| Q |
197 |
ccacttcacatcatcggttcatcaagagcgctattctgagtttctggccaacaaaaagtttgtggaagnnnnnnntttccggttggaagggaacaaattc |
296 |
Q |
| |
|
| ||||| ||||| ||| ||||||||||||||||| ||||||||||| ||||||| |||| | || |||||||||||||||| ||||||| |
|
|
| T |
2440173 |
gcgcttcatatcattggtccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaaggggacaaatta |
2440272 |
T |
|
| Q |
297 |
ttagatatccaagtaatgatagtgtccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgacattagctaaagagttctttgcaaatg |
396 |
Q |
| |
|
| |||||| |||| | ||||| | ||||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
2440273 |
tcagatattcaagcagtgataacgaccagagggtggggagaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatg |
2440372 |
T |
|
| Q |
397 |
catat |
401 |
Q |
| |
|
||||| |
|
|
| T |
2440373 |
catat |
2440377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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