View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18357_low_7 (Length: 473)
Name: NF18357_low_7
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18357_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 11099123 - 11098940
Alignment:
| Q |
13 |
atcatagggcaagtatgttgtaaacactccagtagaatattacgtttcttcacttcaaaaaacaaatgaacatcaattctgtgtttaaatatctttaaat |
112 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| |
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| T |
11099123 |
atcatagggcaagtatgttgtaaacactccaggagaatattacgtttcttcacttcaagaaacaaatgagcatcaattttgtgtttaaatatctttaaat |
11099024 |
T |
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| Q |
113 |
atagaacaaacaattagtttcatatgctagttttctgtactatgagaaacttctgattcaactctttttcattcttgaaggagt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11099023 |
atagaacaaacaattagtttcatatgctagttttctgtactatgagaaacttctgactcaactctttttcattcttgaaggagt |
11098940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 225 - 382
Target Start/End: Complemental strand, 11098915 - 11098758
Alignment:
| Q |
225 |
ttagtattgaattccagtggccatgaatgacttacagattttgttattactattttctatattcttccaattagctacggttatgtcagttcttaaatat |
324 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11098915 |
ttagtattgaattccattgaccatgaatgacttacagattttgttattactattttctatattcttccaattagctacagttatgtcagttcttaaatat |
11098816 |
T |
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| Q |
325 |
acaatttcttaattctttcctagcattacttacccaacaagtggaaatatattgtctc |
382 |
Q |
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| T |
11098815 |
acaatttcttaattctttcctagcattatttacccaacaagtggaaatatattgtctc |
11098758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 473
Target Start/End: Complemental strand, 11098696 - 11098667
Alignment:
| Q |
444 |
ccattcttccatgttggcatcgagggaatc |
473 |
Q |
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| T |
11098696 |
ccattcttccatgttggcatcgagggaatc |
11098667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 17998206 - 17998389
Alignment:
| Q |
13 |
atcatagggcaagtatgttgtaaacactccagtagaatattacgtttcttcacttcaaaaaacaaatgaacatcaattctgtgtttaaatatctttaaat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| |
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| T |
17998206 |
atcatagggcaagtatgttgtaaacactccaggagaatattacgtttcttcacttcaagaaacaaatgagcatcaattttgtgtttaaatatctttaaat |
17998305 |
T |
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| Q |
113 |
atagaacaaacaattagtttcatatgctagttttctgtactatgagaaacttctgattcaactctttttcattcttgaaggagt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17998306 |
atagaacaaacaattagtttcatatgctagttttctgtactatgagaaacttctgactcaactctttttcattcttgaaggagt |
17998389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 225 - 382
Target Start/End: Original strand, 17998414 - 17998571
Alignment:
| Q |
225 |
ttagtattgaattccagtggccatgaatgacttacagattttgttattactattttctatattcttccaattagctacggttatgtcagttcttaaatat |
324 |
Q |
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|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17998414 |
ttagtattgaattccattgaccatgaatgacttacagattttgttattactattttctatattcttccaattagctacagttatgtcagttcttaaatat |
17998513 |
T |
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| Q |
325 |
acaatttcttaattctttcctagcattacttacccaacaagtggaaatatattgtctc |
382 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17998514 |
acaatttcttaattctttcctagcattatttacccaacaagtggaaatatattgtctc |
17998571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 473
Target Start/End: Original strand, 17998633 - 17998662
Alignment:
| Q |
444 |
ccattcttccatgttggcatcgagggaatc |
473 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
17998633 |
ccattcttccatgttggcatcgagggaatc |
17998662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 229 - 382
Target Start/End: Original strand, 36283417 - 36283563
Alignment:
| Q |
229 |
tattgaattccagtggccatgaatgacttacagattttgttattactattttctatattcttccaattagctacggttatgtcagttcttaaatatacaa |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
36283417 |
tattgaattccagtggccatgaatgacttacagattt-------actattttctatactcttccaattaactacagttatgtcagttcttaaatatacaa |
36283509 |
T |
|
| Q |
329 |
tttcttaattctttcctagcattacttacccaacaagtggaaatatattgtctc |
382 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36283510 |
tttcttaattctttcctagcattacttatccaacaagtggaaatatattgtctc |
36283563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 229 - 371
Target Start/End: Original strand, 19913083 - 19913217
Alignment:
| Q |
229 |
tattgaattccagtggccatgaatgacttacagattttgttattactattttctatattcttccaattagctacggttatgtcagttcttaaatatacaa |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
19913083 |
tattgaattccagtggccatgaatgacttacagattt-------actattttctatattcttccaattaactacg-ttatgtcagttcttaaatatacaa |
19913174 |
T |
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| Q |
329 |
tttcttaattctttcctagcattacttacccaacaagtggaaa |
371 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19913175 |
tttcttaattcttgcctagcattacttacccaacaagtggaaa |
19913217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 229 - 371
Target Start/End: Original strand, 40571576 - 40571711
Alignment:
| Q |
229 |
tattgaattccagtggccatgaatgacttacagattttgttattactattttctatattcttccaattagctacggttatgtcagttcttaaatatacaa |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |
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| T |
40571576 |
tattgaattccagtggccatgaatgacttacagattt-------attattttctatattcttccaattaactacagttatgtcggttcttaaatatacaa |
40571668 |
T |
|
| Q |
329 |
tttcttaattctttcctagcattacttacccaacaagtggaaa |
371 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
40571669 |
tttcttaattcttgcctagcattacttacccaacaagcggaaa |
40571711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 6560484 - 6560591
Alignment:
| Q |
83 |
catcaattctgtgtttaaatatctttaa--atatagaacaaacaattagtttcata-tgctagttttctgtactatgagaaacttctgattcaactcttt |
179 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||| |||||||||||||||| || ||||||||| ||||||||||||||||| |||||| ||||| |
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| T |
6560484 |
catcaattctctgtttaattatctttttgtatatagtacaaacaattagtttcgtaatgctagtttgttgtactatgagaaactt-acattcaagtcttt |
6560582 |
T |
|
| Q |
180 |
ttcattctt |
188 |
Q |
| |
|
||||||||| |
|
|
| T |
6560583 |
ttcattctt |
6560591 |
T |
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