View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18357_low_9 (Length: 307)
Name: NF18357_low_9
Description: NF18357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18357_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 20973824 - 20973549
Alignment:
| Q |
19 |
caaatgctatcaagcaatgtcgaatagaaaatattccggaattatcaaattgatcaataaactttaaatacctgcagatgccacattcatcacagtggta |
118 |
Q |
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| T |
20973824 |
caaatgctatcaagcaacgtcgaataggaaatattctggaattatcaaattgattgatgaactttaattacctgcagatgccacattcatcacagtggta |
20973725 |
T |
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| Q |
119 |
ttgctgctttgaaatctgaaagaacgaacaaattttcaatacaatgtgccgaattaaggcctgaactaaaagaaacaaacatgcataactcaatttctaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20973724 |
ttgctgctttgaaatctgaaagaacgaacaaattttcaatacaatgtgccgaattaaggcctgaactaaaagaaacaaacatgcataactcaatttctaa |
20973625 |
T |
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| Q |
219 |
tcaccctagagaacttacatcatcatcaaagaatttgcatgtagcacaaaagtactttcccaagcatactccacag |
294 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20973624 |
tcatcctagagaacttacatcatcatcaaagaatttgcatgtaccacaaaagtactttcccaagcatactccacag |
20973549 |
T |
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