View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18358_high_6 (Length: 227)
Name: NF18358_high_6
Description: NF18358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18358_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33126308 - 33126529
Alignment:
| Q |
1 |
taagtggcatgtctagtgttgggtgtctaagcctcagattgtaatacacagttgacccagctgctcctgtaatcatacctgcaataacaaagatagcagc |
100 |
Q |
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| T |
33126308 |
taagtggcatgtctagtgttgggtgtctaagcctcagattgtaatacacagttgacccagctgctcctgtaatcatacctgcaataacaaagatagcagc |
33126407 |
T |
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| Q |
101 |
cagagtatttgaaagagctttcgaaaatgaattgggacacatcgataaaaatttagaaagaatgcatgtattgtgtgtttggaaccgcattcagaagcta |
200 |
Q |
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| T |
33126408 |
cagagcatttgaaagtgctttcgaaaatgaattgggacacatcgataaaaatttagaaagaatgcatgtattgtgtgtttggaaccgcattcagaagcta |
33126507 |
T |
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| Q |
201 |
gttcatatagcttctgaatcgc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
33126508 |
gttcatatagcttctgaatcgc |
33126529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7569037 - 7568953
Alignment:
| Q |
1 |
taagtggcatgtctagtgttgggtgtctaagcctcagattgtaatacacagttgacccagctgctcctgtaatcatacctgcaat |
85 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||| || |||||||| ||||| || |||||||||||||||| |
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| T |
7569037 |
taagtggcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatacctgcaat |
7568953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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