View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18358_low_3 (Length: 340)
Name: NF18358_low_3
Description: NF18358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18358_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 33126511 - 33126818
Alignment:
| Q |
18 |
catatagcttctgaatcgcgaccagccacatgctactatttgtagcttcaccaatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaa |
117 |
Q |
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| T |
33126511 |
catatagcttctgaatcgcagccaaccacatgctactatttgtagctgcaccaatttcaggtccaaaactgtatttgagacgtgagaaagataattgaaa |
33126610 |
T |
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| Q |
118 |
cgtaaatccaaacatcgactatatatctaacaagaatgaataaacataagatagaaatatactaacacttagagagggctgtagaagactttggatcaaa |
217 |
Q |
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| T |
33126611 |
cgtaaatccaaacatcgactatacatctaacaagaatgaataaacataagatagaaatatactaacacttagagagggctgtagaagactttggatcaaa |
33126710 |
T |
|
| Q |
218 |
accaataatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttcccaatgctgctccaaaaaatccgacaatagaccctacg |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33126711 |
accaatgatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttcccaatgctgctccaaaaaatccgacaatagaccctacg |
33126810 |
T |
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| Q |
318 |
acaattct |
325 |
Q |
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|||||||| |
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| T |
33126811 |
acaattct |
33126818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 194 - 301
Target Start/End: Complemental strand, 7568728 - 7568621
Alignment:
| Q |
194 |
ggctgtagaagactttggatcaaaaccaataatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttcccaatgctgctcca |
293 |
Q |
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||||||||||||||| |||||||| ||||| ||||||| |||||||||| ||||||||| ||||||||||| ||||| ||||||||||| |||||||| |
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| T |
7568728 |
ggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaaaattccaccacctcctacacctccaacacttcccaaagctgctccc |
7568629 |
T |
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| Q |
294 |
aaaaatcc |
301 |
Q |
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| T |
7568628 |
aaaaatcc |
7568621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 32663744 - 32663699
Alignment:
| Q |
93 |
tgagacgtgagaaagataattgaaacgtaaatccaaacatcgacta |
138 |
Q |
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|||||||||||||||| |||| ||| |||||||||||||| ||||| |
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| T |
32663744 |
tgagacgtgagaaagacaattcaaatgtaaatccaaacattgacta |
32663699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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