View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18358_low_4 (Length: 286)
Name: NF18358_low_4
Description: NF18358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18358_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 46714535 - 46714782
Alignment:
| Q |
18 |
acttcccctctcataatgcggtcattcttgttcttattattaccatcatggatgctaaggacgttcataatggtatgaaacatctcttcttatataaatg |
117 |
Q |
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| T |
46714535 |
acttcccctctcataatgcggtcattcttgttcttattattatcatcatggatgctaaggacgttcataatggtatgaaacatctcttcttatataaatg |
46714634 |
T |
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| Q |
118 |
acaacaaagaataaaaagagact----tatcaaatatcaaaatac-nnnnnnnnnaagaaatatcaaaagacttgctatgtgaatgaattgg-nnnnnnn |
211 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46714635 |
acaacaaagaataaaaagagacttatatatcaaatatcaaaatacttttttttaaaagaaatatcaaaagacttgctatgtgaatgaattggtttttttt |
46714734 |
T |
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| Q |
212 |
nnagaggatgtgaatgaattagttgtgtatttatagagagaatagaaa |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46714735 |
ttagaggatgtgaatgaattagttgtgtatttatagagagaagagaaa |
46714782 |
T |
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