View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18358_low_5 (Length: 248)
Name: NF18358_low_5
Description: NF18358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18358_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 5678314 - 5678548
Alignment:
| Q |
14 |
agagagagaaagggtggttgggtggacatagagatagggggatggatattaaatgaagaaaaagtatggttctctttaggcctcctaatatctctaaagc |
113 |
Q |
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| T |
5678314 |
agagagagaaagggtggttgggtggacatagagatagggggatggatattaaatgaagaaaaaatatgtttctctttaggcctcctaatatctctaaagc |
5678413 |
T |
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| Q |
114 |
cccataaatacatattcgatagttatttattgaaaatgtacatctggtagataactattatttaggaccatagggagtttgggggcctaaagagaaatgc |
213 |
Q |
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| T |
5678414 |
cccataaatacatattcggtagttatttattggaaatgtacatctaatagataactattatttaagaccatagagagattgggggtctaaagagaaacgc |
5678513 |
T |
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| Q |
214 |
tcaagctaaaatagcttttctaaaattgggcttgc |
248 |
Q |
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| T |
5678514 |
tcaagctaaaatagcttttctaaaattgggcttgc |
5678548 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 8445443 - 8445387
Alignment:
| Q |
83 |
ttctctttaggcctcctaatatctctaaagccccataaatacatattcgatagttat |
139 |
Q |
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| T |
8445443 |
ttctctttagaccccttaatatctctaaaaccccctaaatacacattcgataattat |
8445387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 34683945 - 34683889
Alignment:
| Q |
83 |
ttctctttaggcctcctaatatctctaaagccccataaatacatattcgatagttat |
139 |
Q |
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| T |
34683945 |
ttctatttaggcctccaaatatttctaaagccccttaaatacgcatccgatagttat |
34683889 |
T |
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