View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18358_low_6 (Length: 239)
Name: NF18358_low_6
Description: NF18358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18358_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 25226459 - 25226353
Alignment:
| Q |
83 |
ggaatcttcaagaaaacaagggaaaaacgaaaactggaaaagcttgaagaacaagcataaattgcggaaacggttatggatcgtaactaactttctcatg |
182 |
Q |
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| T |
25226459 |
ggaatcttcaagaaaacaacggaaaaacgaaaactggaaaagcttgaagaacaagcatcaatgacagaaacaattatggatcgtaactaactctctcatg |
25226360 |
T |
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| Q |
183 |
agagaga |
189 |
Q |
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||||||| |
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| T |
25226359 |
agagaga |
25226353 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 24733874 - 24733837
Alignment:
| Q |
184 |
gagagaaagcaaaataaaactgataccatattatgaat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
24733874 |
gagagaaagcaaaataaaactgataccatattatgaat |
24733837 |
T |
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