View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_high_1 (Length: 678)
Name: NF18359_high_1
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 4 - 610
Target Start/End: Original strand, 51425597 - 51426206
Alignment:
| Q |
4 |
gatggacatcatcacaaagtaggagacataagaagaacaggtcttttttcttttgaaaaaagaaagaaccataaggatgtagaaaagcattgattg---- |
99 |
Q |
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| T |
51425597 |
gatgaacattatcacaaagtaggagacataagaagaacaggtcctttttcttttgaaaaaagaaagaaccataaggatgtagaaaagcattgattgaatt |
51425696 |
T |
|
| Q |
100 |
-aatgtctcaattcctttaccatgtaaaccatatttagaagccaagtcaagattaggcttgtagctcacgtgttagcttagatgagctgcttagtgctag |
198 |
Q |
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| T |
51425697 |
gaatgtctcaattcctttaccatgtaaaccatatttagaagccaactcaagattaggcttgtagctcacgagttagcttagatgagctgcttagtgctag |
51425796 |
T |
|
| Q |
199 |
caatttagcacaatcaattgtgtatcaacaagccaactcaaaatattgtaaacttcatccaaaaaatatggggttttcatatgaactgttccgggtggtc |
298 |
Q |
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| T |
51425797 |
caatttagcacaatcaattgtgtatcaacaagccaactcaaaatattgtaaacttcatccaaaaaatatggggttttcatatgaactgttccgggtggtc |
51425896 |
T |
|
| Q |
299 |
gaagatttttagcatttggtttttaaactccatttcaacaccaaaacatgtctgattaaaatgagattcaattgattatttacttaattttaatacaatt |
398 |
Q |
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| T |
51425897 |
gaagatttttagcatttggtttttaaactccatttcaacaccaaaacatgtctgattaaaatgagattcaaatgattatttacttaattttaatacaatt |
51425996 |
T |
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| Q |
399 |
ttccactnnnnnnnnntaggtttttactatttttgatttaacactaacaaattatcataaatggtggttagccactactctaatcattattcaagccaca |
498 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51425997 |
ttccact-aaaaaaaatagg-ttttactatttttgatttaacactaacaagttatcataaatggtggttagccactactctaatcattattcaagccaca |
51426094 |
T |
|
| Q |
499 |
ttcgactaacactttgaccaccaccggtcaatcaacatttcgaatcaccaattcaatcaccactatggaccacctctaatcatcattttatacacctcta |
598 |
Q |
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| T |
51426095 |
ttcgactaacactttgaccaccaccggtcaatcaacatttcgaatcaccaattcaataaccactatggaccacctctaatcatcattttatacacctcta |
51426194 |
T |
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| Q |
599 |
ttctccaatttg |
610 |
Q |
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|||||||||||| |
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| T |
51426195 |
ttctccaatttg |
51426206 |
T |
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