View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_high_12 (Length: 414)
Name: NF18359_high_12
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 27697493 - 27697111
Alignment:
| Q |
16 |
cctactacccatcacaccctcaacaagactagttcacctccctttctcctccgtgtgtgaccgacaaatagtgtataattccaatcgtgtgaatttgtcc |
115 |
Q |
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| T |
27697493 |
cctactgcccatcacaccctcaacaagactagttcacctccctt----------gtatgaccgacaaatagtgtataattccaatcgtgtgaatttgtcc |
27697404 |
T |
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| Q |
116 |
acacatatatatacttcaaattgtatttaaattgaaaaccacaaaatctctaatagacatagatttctcttgtcgcattgcatatatgattgtatctgta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27697403 |
acacatatatatacttcaaattgtatttaaattgaaaaccacaaaatctctaatagacatagatttctcttgtcgcattgcatgtatgattgtatctgta |
27697304 |
T |
|
| Q |
216 |
ttattagcttccattttttgggtatataaatatttctaaatattgtgtgccggtgcttagtagctggagctctctggtgacttatttttgttgttggcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27697303 |
ttattagcttccattttttgggtatataaatatttctaaatattgtgtgccggtgcttagtagctggagctctctggtgacttatttttgttgttggcaa |
27697204 |
T |
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| Q |
316 |
attgggaaaccattccttaagttctagtacctttggcatcccacccataaattgttagatttgtgggacattggtcaatgttcatgatgatgt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
27697203 |
attgggaaaccattccttaagttctagtacctttggcatcccacccataaattgctagatttgtgggacattggtcaatgttcatgataatgt |
27697111 |
T |
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