View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_high_2 (Length: 645)
Name: NF18359_high_2
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 22 - 617
Target Start/End: Complemental strand, 9369756 - 9369160
Alignment:
| Q |
22 |
tttagataaaaaacaggctttctatcttggattnnnnnnnttcacaattaaaaacaaaagaaacacgatattagatgatgatcaataaacccatcaaaat |
121 |
Q |
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| T |
9369756 |
tttagataaaaaacatgctttctatcttggattaaaaaaattctcaattaaaaacaaaagaaacacgatattagatgatgatcaataaacccatcaaaat |
9369657 |
T |
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| Q |
122 |
tactcattttttaaataaataaaaaattgatc-gtggttacaacctgatcaagtttacatgcaaaaaatgtcgattgaaagttatgattcgatcgtttga |
220 |
Q |
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| T |
9369656 |
tactcattttttaaataaataaaaaattgatcagtggttacaacctgatcaagtttacatacaaaaattgtcgattgaaagttatgattcgatcgtttga |
9369557 |
T |
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| Q |
221 |
gcaatttaaaaaattagaggcaattagaatgagaaaattgatcttcgggtgtctagtgtttgctcagagcacatcaaactgactaaaaattccaaacgat |
320 |
Q |
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| T |
9369556 |
gcaatttaaaaaattagaggcaactagaatgagaaaattgatcttcgggtgtctagtgtttgctcagagcacctcaaactgactaaaaattccaaacgat |
9369457 |
T |
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| Q |
321 |
aaccaactacctctcaaacaatagttcattgccgtcaagacctctgatataaagaaacacaaaatcaaaactcgttcttgttaggaacggtaattaatta |
420 |
Q |
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| T |
9369456 |
aactaactacctctcaaacaatagttcattgccgtcaagacctctgatataaagaaacacaaaaacaaaactcgttcttgttaggaacggtaattaatta |
9369357 |
T |
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| Q |
421 |
ccgtttacctctttttctcaattacattttgttttgtttctacttatattctgttttattacactgttagagtatgcaaaccaaactcttcctataattt |
520 |
Q |
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| T |
9369356 |
ccgtttacctctttttctcaattacattttgttttatttctacttatattctgttttattacactgttagagtatgcaaaccaaactcttcgtataattt |
9369257 |
T |
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| Q |
521 |
gagcatcgttatatataaattgtggtaaactatcattaactagttttcatgaaaacatttcagttcatctatgagccaattaaattgatcattgtca |
617 |
Q |
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| T |
9369256 |
gagcatcgttgtatataaattttggtaaactatcattaactagttttcatgaaaacatttcagttcatctaggagccaattaaattgatcattgtca |
9369160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 449 - 517
Target Start/End: Original strand, 11528888 - 11528956
Alignment:
| Q |
449 |
ttgttttgtttctacttatattctgttttattacactgttagagtatgcaaaccaaactcttcctataa |
517 |
Q |
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| T |
11528888 |
ttgttttatttctacctatattatgtttgattacactgatagagtatgcaaatcaaactctttctataa |
11528956 |
T |
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