View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_high_20 (Length: 329)
Name: NF18359_high_20
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 22371581 - 22371281
Alignment:
| Q |
1 |
ccctttgcaaaggaaaatatgtttgatacttcattaattaggacaacaattagaaaaggtaggattagaattaaacaactactcgttcgagaacaaaggg |
100 |
Q |
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| T |
22371581 |
ccctttgcaaaggaaaatatgtttgatacttcattaattaggacaacaattagaaaaggtaggattagaattaaacaactactcgttcgacaacaaaggg |
22371482 |
T |
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| Q |
101 |
gaaaatacatgatgaaaatgctcaacaaccaagtagcacgataacataatttagaaatatatttcagcctcatcttgttgacaaccttctccagctcatc |
200 |
Q |
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| T |
22371481 |
gaaaatacatgatgaaaatgctcaacaaccaagtagcacgataacagaatttagaaatatatttcggcctcatcttgttgacaaccttctccagctcatc |
22371382 |
T |
|
| Q |
201 |
aaatggattagatggtatccaatagacctataagattgatcaaaaaataacaacgatcagacatatattcaaagctcgtatgaagcatgtaatgaaagat |
300 |
Q |
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| T |
22371381 |
aaatggattggatggtatccaatagacctataagattgagcaaagaataacaacgatcagacatatattcaaagctcgtatgaagcatgtaatgaaagat |
22371282 |
T |
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| Q |
301 |
c |
301 |
Q |
| |
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| T |
22371281 |
c |
22371281 |
T |
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