View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_high_22 (Length: 317)
Name: NF18359_high_22
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_high_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 8496441 - 8496743
Alignment:
| Q |
15 |
gacacaaattttgattatagaatgtattttcagcttctttcttatgattgatgtgattttataacaagaataatatcattcaatactgttaaatcctttt |
114 |
Q |
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| T |
8496441 |
gacacaaattttgattatagaatgtattttcagcttctttcttatgattgatgtgattttataacaagaataatatcattcaatactgttaaatactttt |
8496540 |
T |
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| Q |
115 |
tacctgatgatgataaagttatgcgcattagtcctcaatttgagcatactttgagcagggtagtagaattctgagatggaccgtcgaggttggccgtgga |
214 |
Q |
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| T |
8496541 |
tacctgatgatgataaagttatgcgcattagtcctcaatttgagcatactttgagcagggtagtagaattctgagatggaccgtcgaggttggccgtgga |
8496640 |
T |
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| Q |
215 |
agaaaaaatcatcagacaaaatcacaaaggctgagaaaccatttgttacacttgactctgttggttccaccttgtcttctgtggcacatttaggaaacca |
314 |
Q |
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| T |
8496641 |
agaaaaaatcatcagacaaaatcacaaaggctgagaaaccatttgttacacttgactctgttggttccaccttgtcttctgtggcacatttaggaaacca |
8496740 |
T |
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| Q |
315 |
ggt |
317 |
Q |
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| T |
8496741 |
ggt |
8496743 |
T |
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