View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_high_24 (Length: 299)
Name: NF18359_high_24
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 284
Target Start/End: Complemental strand, 8285763 - 8285482
Alignment:
| Q |
3 |
tggagtagcataggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccccacatcaaccttgaatgcggcgtccttagtaatc |
102 |
Q |
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| T |
8285763 |
tggagtaccagaggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccctgcatcaaccttgaatgcggcgtccttagtaatc |
8285664 |
T |
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| Q |
103 |
aacgtacatttttccgcttcatcttccacaccaaatcctgacaaacacacagacaacaattcatctctcatatgcaacttggaaacacaaacttcaacta |
202 |
Q |
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| T |
8285663 |
accatacatttttccgcttcatcttccacaccaaatcctgacaaacacacaaataacaattcatctctcatatgcaacttggaaacacaaacttcaacta |
8285564 |
T |
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| Q |
203 |
aatgaagtcatgcacattgcacacgtctaagggatataattaaacgaaatcatacccggtgctttaaattttgggtgcatat |
284 |
Q |
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| T |
8285563 |
aatgaaatcatgcacattgcacacgtctaagggatataattaaacgaaatcatacccggtgctttaaattttgggtgcatat |
8285482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 34697492 - 34697227
Alignment:
| Q |
14 |
aggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccccacatcaaccttgaatgcggcgtccttagtaatcaacgtacattt |
113 |
Q |
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| T |
34697492 |
aggagtcaagcagaactgctccatcgccaaagaatttacgaacgttaaagggccccacattaacttcgaatgcaccgtcgatagtaatcaccctacattt |
34697393 |
T |
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| Q |
114 |
ttccgcttcatcttccacaccaaatcctgacaaacacacagacaacaattcatctctcatatgcaacttggaaacacaaacttcaactaaatgaagtcat |
213 |
Q |
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| T |
34697392 |
tgcagtaacattgtcctcactaaaacctgagaaacacacatacaacaatttatgagtcatatgcaactcgaaagcacaaacatcaaccaaatgaagccat |
34697293 |
T |
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| Q |
214 |
gcacattgcacacgtctaagggatataattaaacgaaatcatacccggtgctttaaattttgggtg |
279 |
Q |
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| T |
34697292 |
gaacattgcacacgtccatgagatattatagaacataaccataccccgtgctttaaattctgggtg |
34697227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 34687580 - 34687526
Alignment:
| Q |
14 |
aggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccc |
68 |
Q |
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| T |
34687580 |
aggagtcaaacagaactgctctattaccaaaggattcacgaacgttaaagggccc |
34687526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 24969055 - 24968890
Alignment:
| Q |
14 |
aggagtcaaagagaactgctctatctccaaaggatgcacgaacgttaaagggccccacatcaaccttgaatgcggcgtccttagtaatcaacgtacattt |
113 |
Q |
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|||||||||| ||||||||| ||| ||||| || ||||||||||||||| ||| ||| ||||| |||| |||| | ||||||| || | || |||| |
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| T |
24969055 |
aggagtcaaatagaactgcttcatcaccaaacaattcacgaacgttaaaggaccctgcatgaacctcgaatacggcaccattagtaaccaccctatattt |
24968956 |
T |
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| Q |
114 |
ttccgcttcatcttccacaccaaatcctgacaaacacacagacaacaattcatctctcatatgcaact |
181 |
Q |
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| T |
24968955 |
tgtcgtaccatcttccttaccaaaacctgacaaacacaca--caacaattcatctgtaatatgcaact |
24968890 |
T |
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