View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_high_33 (Length: 241)
Name: NF18359_high_33
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 3083583 - 3083799
Alignment:
| Q |
10 |
caacttataatggataactttagtcactttttgttgatgaataatataattgtcacttatatttttaattatatagtaggtgcccccatctctctttggg |
109 |
Q |
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| T |
3083583 |
caacttataatggataactttagtcactttttgttgatgaataatataattgtcacttatatttttaattatatagtaggtgccaccatctctctctggg |
3083682 |
T |
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| Q |
110 |
aacctccatcattataaaaagtaatttaaagtgaactcttcgatgtgaatcttataagaaaagtgaatt-nnnnnnntagtgtatatagcaac-tttttg |
207 |
Q |
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| T |
3083683 |
aacctccatcattataaaaagtaatttaaagcgaactcttcgatgtgaatcttataagaaaagtgaattaaaaaaaatagtgtatatagcaacttttttg |
3083782 |
T |
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| Q |
208 |
tttctaacggcaaaatt |
224 |
Q |
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||||||||||||||||| |
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| T |
3083783 |
tttctaacggcaaaatt |
3083799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 3076183 - 3076239
Alignment:
| Q |
122 |
tataaaaagtaatttaaagtgaactcttcgatgtgaatcttataagaaaagtgaatt |
178 |
Q |
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|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
3076183 |
tataaaaactaatttaaagtaaactcttcaatgtgaatcttataagaaaagtgaatt |
3076239 |
T |
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