View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_high_4 (Length: 582)
Name: NF18359_high_4
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 17 - 574
Target Start/End: Original strand, 45143688 - 45144252
Alignment:
| Q |
17 |
agaaagaactggtgaattgagagaattcacgatgattagagatacagaaca--------------agtgcaagtgagtgacataataataataaaataaa |
102 |
Q |
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| T |
45143688 |
agaaagaactggtgaattgagagaattcacgatgattagagatacagaacagaacagttactacaagtgcaagtgagtaacataataataa---aataaa |
45143784 |
T |
|
| Q |
103 |
agctaactaattaactacaaagtgggcattgaactaacccattttcattacaatcaacacacttaacaacaacagtgttcccctgtttctgtttattcac |
202 |
Q |
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| T |
45143785 |
agataactaa----ctacaaattgggcactgaactaacccattttcattacaatcaccacacttaacaacaacagtgttcccctgtttctgtttattcac |
45143880 |
T |
|
| Q |
203 |
catcttacagcttccgttacatcgaaaacaaggcaagaatctcatatcaccacaaccctcacatacacctcctccaccaacagcttttcttggcaaaccc |
302 |
Q |
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| T |
45143881 |
catcttacagcttccgttacatcgaaaacaaggcaagaatctcatatcaccacaaccctcacatacacctcctccaccaacagcttttcttggcaaaccc |
45143980 |
T |
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| Q |
303 |
tgaataacctctcccaacaaaccctcttccacaaccttcaacatctcttcagcaccaccgatataatatcccttcacaaacactctcggcggaatcacca |
402 |
Q |
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| T |
45143981 |
tgaataacctctcccaacaaaccctcttccacaaccttcaacatctcttcagcaccaccgatataatatcccttcacaaacactctcggcggaaccacca |
45144080 |
T |
|
| Q |
403 |
tcttctctttcagaagctccctcagttcctctttaaacccactatccatcgaaacgtcacgctcgcatatttgtacaccaaatgcatcaaaagctgctct |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144081 |
tcttctctttcagaagctccctcagttcctctttaaacccactatccatcgaaacgtcacgctcgcatatttgtacaccaaatgcatcaaaagctgctct |
45144180 |
T |
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| Q |
503 |
caccgcattgcaagcctcaaatgtcctccgaacacctctcaacgttgttgtatagatcaccactttcttctc |
574 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144181 |
caccgcattgcaagcctcaaatgtcctccgaacacctctcaacgttgttgtatagatcaccactttcttctc |
45144252 |
T |
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