View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_low_11 (Length: 459)
Name: NF18359_low_11
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Original strand, 40004458 - 40004887
Alignment:
| Q |
11 |
cacagaactcggaaccaagcatgtcgtgtatatcaagattcgcagagaggcttagatcaataactcccttgatgatttccaatgttaaaatgaatcctaa |
110 |
Q |
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| T |
40004458 |
cacagaactcggaaccaagcatgtcgtgtatatcaagattcgtagagaggcttagatcaataactcccttgatgatttccaatgttaaaatgaatcctaa |
40004557 |
T |
|
| Q |
111 |
agtggacaatactctaacagcattagcagccctgcatatgtattcacttgtctccaatgcagtatagtttttctcttgttcttcaagactgacataattt |
210 |
Q |
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| T |
40004558 |
agtggacaatgctctaacagcatcagcagccctgcatatgtattcacttgtctccagtccagtatagtttt-ctcttgttcttcaagactgacataattt |
40004656 |
T |
|
| Q |
211 |
ttattgggaattaaaacttgtggatcagattggtttatttgatcttctatcatgtcatctctggcttcaacatgttctccgacccatatgaatccattac |
310 |
Q |
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| T |
40004657 |
ttattgggaattaaaacttgtggatcagattggtttatttgatcttctatcatgtcatctctggcttcaacatgttctccgacccatatgaatccattac |
40004756 |
T |
|
| Q |
311 |
agccaagtattaaatcaataccatagtgctccagatgatggaaatgttggttctgtctcttcactaaatacggtgcgactgtaagcagttgaccggaact |
410 |
Q |
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| T |
40004757 |
agccaagtattaaatcaataccatagtgctccagatgatggaaatgttggttctgtctcttcactaaatacggtgcgactgtaagcagttgaccggaact |
40004856 |
T |
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| Q |
411 |
aagctgcaatacaactgaaagccattagtaa |
441 |
Q |
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| T |
40004857 |
aagctgcaatacaactgaaagccattagtaa |
40004887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 50242328 - 50241898
Alignment:
| Q |
11 |
cacagaactcggaaccaagcatgtcgtgtatatcaagattcgcagagaggcttagatcaataactcccttgatgatttccaatgttaaaatgaatcctaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
50242328 |
cacagaactcggaaccaagcatgtcgtgtatatcaagattcgcagaaaggctgagatcaataactcccttgatgatttccgatgttataatgaatcctaa |
50242229 |
T |
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| Q |
111 |
agtggacaatactctaacagcattagcagccctgcatatgtattcacttgtctccaatgcagtatagtttttctcttgttcttcaagactgacataattt |
210 |
Q |
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| T |
50242228 |
agtggataatcctctaacagcattagcagccctgcatatgtactttcttgtctccagtgctgtgtactttttctcttgttcttcaagactcacagaattt |
50242129 |
T |
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| Q |
211 |
ttattgggaattaaaacttgtggatcagattggtttatttgatcttctatcatgtcatctctggcttcaacatgttctccgacccatatgaatccattac |
310 |
Q |
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||||||||| ||||||| ||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||| || ||||||||||| ||||||| |
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| T |
50242128 |
ttattgggagttaaaacctgtggatcagattggttcacttgatcttctaccatgtcatctctgacttcaacatgttccccaacccatatgaacccattac |
50242029 |
T |
|
| Q |
311 |
agccaagtattaaatcaataccatagtgctccagatgatggaaatgttggttctgtctcttcactaaatacggtgcgactgtaagcagttgaccggaact |
410 |
Q |
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|||||| ||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| | ||| |
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| T |
50242028 |
agccaattattaaatcaataccgtactgctctagatgatggaaatgttgtttctgcctcttcactaaatacggtgtgactgtaagcagttgaccagtact |
50241929 |
T |
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| Q |
411 |
aagctgcaatacaactgaaagccattagtaa |
441 |
Q |
| |
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||||||||||| ||| |||||||||||||| |
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|
| T |
50241928 |
aagctgcaataacactcaaagccattagtaa |
50241898 |
T |
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