View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18359_low_12 (Length: 414)
Name: NF18359_low_12
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 27697493 - 27697111
Alignment:
| Q |
16 |
cctactacccatcacaccctcaacaagactagttcacctccctttctcctccgtgtgtgaccgacaaatagtgtataattccaatcgtgtgaatttgtcc |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27697493 |
cctactgcccatcacaccctcaacaagactagttcacctccctt----------gtatgaccgacaaatagtgtataattccaatcgtgtgaatttgtcc |
27697404 |
T |
|
| Q |
116 |
acacatatatatacttcaaattgtatttaaattgaaaaccacaaaatctctaatagacatagatttctcttgtcgcattgcatatatgattgtatctgta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27697403 |
acacatatatatacttcaaattgtatttaaattgaaaaccacaaaatctctaatagacatagatttctcttgtcgcattgcatgtatgattgtatctgta |
27697304 |
T |
|
| Q |
216 |
ttattagcttccattttttgggtatataaatatttctaaatattgtgtgccggtgcttagtagctggagctctctggtgacttatttttgttgttggcaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27697303 |
ttattagcttccattttttgggtatataaatatttctaaatattgtgtgccggtgcttagtagctggagctctctggtgacttatttttgttgttggcaa |
27697204 |
T |
|
| Q |
316 |
attgggaaaccattccttaagttctagtacctttggcatcccacccataaattgttagatttgtgggacattggtcaatgttcatgatgatgt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27697203 |
attgggaaaccattccttaagttctagtacctttggcatcccacccataaattgctagatttgtgggacattggtcaatgttcatgataatgt |
27697111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University