View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_low_16 (Length: 382)
Name: NF18359_low_16
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 19506113 - 19506027
Alignment:
| Q |
278 |
tagcaagcctttaggaattgaacaatggttatttgagacctaaatttcgtaaaaaataattgaacttttgatggaagataaaggttg |
364 |
Q |
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| T |
19506113 |
tagcaagcctttaggaattgaacaatggttatttgagacctaaatttcgtaaaaaataattgaacttttgatggaagataaaggttg |
19506027 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 19506154 - 19506111
Alignment:
| Q |
126 |
gcaacttttttattttaaacgatcaaaattacgttccgatctag |
169 |
Q |
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| T |
19506154 |
gcaacttttttattttaaacgatcaaaattacgttccgatctag |
19506111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 32963741 - 32963697
Alignment:
| Q |
218 |
aaaatgataatgttgttggtttaaaagatgcattacattttctta |
262 |
Q |
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| T |
32963741 |
aaaatgaaaatgtggatggttcaaaagatgcattacattttctta |
32963697 |
T |
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