View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_low_17 (Length: 380)
Name: NF18359_low_17
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 27422048 - 27421703
Alignment:
| Q |
17 |
agaaagaatgtccaaatgatgaattcagttgagaggagaaaattattctttttctcatgagaacgtcactgttgtttcagctttgtttgaagaaaacacg |
116 |
Q |
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| T |
27422048 |
agaaagaatgtccaaatgatgaattcagttgagaggagaacattattctttttctcatgagaacgtcgctgttgtttcagctttgtttgaagaaaacacg |
27421949 |
T |
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| Q |
117 |
catggtgcttgcaagctgtgatctagtggatgtgttgatgtcactttgcagtcctttctattttgaccagaatgttctcaaattaatcgttcttcttgtg |
216 |
Q |
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| T |
27421948 |
catggtgcttgcaagctgtgatctagtggatgtgttgatgtcactttgcagtcctttgtattttgaccagaatgttctca----aatcgttcttcttgtg |
27421853 |
T |
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| Q |
217 |
taaactaaattatgttcnnnnnnnnnnnnnnnnnaaggcttgagattcttaaaccattcaatgatgattctacttttaatgcaaggccctgttgtggata |
316 |
Q |
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| T |
27421852 |
taaactaaattatgttctttttcctttttcttttaaggcttgagattcttaaaccattcaatgatgattctacttttaatgcaaggccttgttgt-gata |
27421754 |
T |
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| Q |
317 |
catttgatttcttccattcatgtcatatttgtcataggttctttgtatctt |
367 |
Q |
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| T |
27421753 |
catttgatttcttccattcatgtcatatttgtcataggttctttgtatctt |
27421703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 372
Target Start/End: Original strand, 21679475 - 21679583
Alignment:
| Q |
262 |
ttcttaaaccattcaatgatgattctacttttaatgcaaggccctgttgtggatacatttgatttcttccattcatgtcatatttgtcataggttctttg |
361 |
Q |
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| T |
21679475 |
ttcttcaaccattcgatgatgattcttcttttaatgcaagaccttattgt-gacacgttagattccttccatttatgccata-ttgttaaaggttctttg |
21679572 |
T |
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| Q |
362 |
tatcttctttt |
372 |
Q |
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| T |
21679573 |
tattttctttt |
21679583 |
T |
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