View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_low_20 (Length: 334)
Name: NF18359_low_20
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 1352522 - 1352205
Alignment:
| Q |
1 |
tctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgat |
100 |
Q |
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|||||||||||||||||||||||||||| | | | ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
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| T |
1352522 |
tctgttatagggctcaaatccatccctttatttgtcttctcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgat |
1352423 |
T |
|
| Q |
101 |
caacatgactaacatctccaaggtattttacattttatcaatagctttctcaacacaaagttcaaccaaagatgtttgatcctttctcttcatcataaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| |
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| T |
1352422 |
caacatgactaacatctccaaggtattttacatt--atcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataaca |
1352325 |
T |
|
| Q |
201 |
ggattcctttgaaacaaaagcagtgatgatgatggcttctttcttgcagatatttcatcccttctcatcataataactgaattcacaaaagtgaactgaa |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1352324 |
ggattcctttgaaacaaaagcaccgatgatgatggcttccttctcgcagatatttcatctcttctcatcataataactgaattcacaaaagtgaactgaa |
1352225 |
T |
|
| Q |
301 |
aacaaggaacagtgaatatt |
320 |
Q |
| |
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||||||||||||| |||||| |
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| T |
1352224 |
aacaaggaacagtaaatatt |
1352205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 2041135 - 2041407
Alignment:
| Q |
1 |
tctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| ||||| |
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| T |
2041135 |
tctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactggtcaagtgtgcagtgaggcaagattctctcaagcatatcatgat |
2041234 |
T |
|
| Q |
101 |
caacatgactaacatctccaaggtattttacattttatcaatagctttctcaacacaaagttcaaccaaagatgtttgatcctttctcttcatcataaca |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| |
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| T |
2041235 |
caacatgactaacatctccaaggtattttaca--ttatcaatacctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataaca |
2041332 |
T |
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| Q |
201 |
ggattcctttgaaacaaaagcagtgatgatgatggcttctttcttgcagatatttcatcccttctcatcataata |
275 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||| ||||| |
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| T |
2041333 |
ggattcctttgaaacaaaagcaccgatgatgatggcttctttctcgcagatacttcgtcccttctcatcgtaata |
2041407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 1357643 - 1357444
Alignment:
| Q |
1 |
tctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
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| T |
1357643 |
tctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgat |
1357544 |
T |
|
| Q |
101 |
caacatgactaacatctccaaggtattttacattttatcaatagctttctcaacacaaagttcaaccaaagatgtttgatcctttctcttcatcataaca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
1357543 |
caacatgactaacatctccaaggtattttaca--ttatcaatagctttctcaacacaaagatcaaccaaacatgtttgatcctttctcttcatcataaca |
1357446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 1364473 - 1364328
Alignment:
| Q |
1 |
tctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
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| T |
1364473 |
tctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgttcaagtgtgcagtgaggcaagattctctcaagcatatgatgat |
1364374 |
T |
|
| Q |
101 |
caacatgactaacatctccaaggtattttacattttatcaatagcttt |
148 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1364373 |
caacatgactaacatctccaaggtattttaca--ttatcaatagcttt |
1364328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 1357077 - 1357021
Alignment:
| Q |
246 |
gcagatatttcatcccttctcatcataataactgaattcacaaaagtgaactgaaaa |
302 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1357077 |
gcagatatttcatcccttctcatcataatcactgaattcacaaaagtgaactgaaaa |
1357021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 36717552 - 36717246
Alignment:
| Q |
4 |
gttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaa |
103 |
Q |
| |
|
||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
36717552 |
gttatagggctcaaatccatcccttcacttgccttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagattctctcaagcatatgatgatcaa |
36717453 |
T |
|
| Q |
104 |
catgactaacatctccaaggtattttacattttatcaatagctttctcaacacaaagttcaaccaaagatgtttgatcctttctcttcatcataacagga |
203 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717452 |
catgactaacatctccaaggtattttaca--ttatcaatagctttctcaacacaaagatcaaccaaagatgtttgatcctttctcttcatcataacagga |
36717355 |
T |
|
| Q |
204 |
ttcctttgaaacaaaagcagtgatgatgatggcttctttcttgcagatatttcatcccttctcatcataata----actgaattcacaaaagtgaactga |
299 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36717354 |
ttcctttgaaaca------------acgatggcttctttcttgcagatatttcatcccttctcatcataataactgactgaattcacaaaagtgaactga |
36717267 |
T |
|
| Q |
300 |
aaacaaggaacagtgaatatt |
320 |
Q |
| |
|
||||||||||||| ||||||| |
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| T |
36717266 |
aaacaaggaacagcgaatatt |
36717246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 24620443 - 24620630
Alignment:
| Q |
6 |
tatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaaca |
105 |
Q |
| |
|
|||| ||||||||||||||| || | ||| ||||||||||||||| | | |||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
24620443 |
tatatggctcaaatccatcc-ttcattggccttctcaatatgcatgttccggtcaagtgtgcagtgaggcaagattcactcaagcatatgatgatcaaca |
24620541 |
T |
|
| Q |
106 |
tgactaacatctccaaggtattttacattttatcaatagctttctcaacacaaagttcaaccaaagatgtttgatcctttctcttcatcat |
196 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
24620542 |
tgactaacatctccaaggtattttaca--ttatcaatagctttctcaacacaaagatcaaccaaatatgtttgatcctttctcttcatcat |
24620630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 18180119 - 18180255
Alignment:
| Q |
36 |
cttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattt |
135 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||||| ||||||| | ||||||| ||||||||||||| ||| ||||| |||||||||| ||| | | |
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| T |
18180119 |
cttctcgatatgcgtcaactggtcaagtgtgcagtgtggcaagattcgttcaagcagatgatgatcaacaggaccaacatttccaaggtatcttaaa--t |
18180216 |
T |
|
| Q |
136 |
tatcaatagctttctcaacacaaagttcaaccaaagatg |
174 |
Q |
| |
|
|||| |||||| | | ||||||||| ||||||| ||||| |
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| T |
18180217 |
tatctatagctgtttgaacacaaagatcaaccagagatg |
18180255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 18180252 - 18180298
Alignment:
| Q |
231 |
gatggcttctttcttgcagatatttcatcccttctcatcataataac |
277 |
Q |
| |
|
|||||| ||||||| |||||||||| | ||||||||||||||||||| |
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|
| T |
18180252 |
gatggcgtctttctcgcagatatttgaccccttctcatcataataac |
18180298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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