View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18359_low_22 (Length: 321)

Name: NF18359_low_22
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18359_low_22
NF18359_low_22
[»] chr3 (13 HSPs)
chr3 (96-321)||(10516044-10516267)
chr3 (96-307)||(10657329-10657539)
chr3 (96-315)||(11410744-11410962)
chr3 (100-321)||(43921824-43922040)
chr3 (96-300)||(21408750-21408961)
chr3 (96-313)||(26565360-26565577)
chr3 (113-232)||(14218476-14218595)
chr3 (267-321)||(27044218-27044272)
chr3 (183-231)||(49861116-49861164)
chr3 (111-229)||(27063816-27063933)
chr3 (104-140)||(2227278-2227314)
chr3 (183-231)||(27109302-27109350)
chr3 (199-231)||(27109700-27109732)
[»] chr6 (13 HSPs)
chr6 (96-319)||(12843964-12844187)
chr6 (98-321)||(14494316-14494538)
chr6 (96-314)||(17540078-17540295)
chr6 (121-319)||(57082-57280)
chr6 (96-227)||(1255633-1255763)
chr6 (258-321)||(19294551-19294614)
chr6 (147-320)||(34709064-34709238)
chr6 (277-321)||(34011084-34011128)
chr6 (277-321)||(34013722-34013766)
chr6 (98-231)||(19542201-19542332)
chr6 (96-150)||(19294443-19294497)
chr6 (266-319)||(14998569-14998622)
chr6 (96-141)||(34708989-34709034)
[»] chr7 (11 HSPs)
chr7 (96-314)||(37338649-37338864)
chr7 (96-227)||(46532915-46533044)
chr7 (177-321)||(10678433-10678576)
chr7 (104-177)||(44572486-44572559)
chr7 (258-321)||(45215898-45215961)
chr7 (96-176)||(27616386-27616466)
chr7 (107-161)||(45215999-45216053)
chr7 (104-161)||(6439808-6439865)
chr7 (96-161)||(22290923-22290988)
chr7 (256-317)||(22291029-22291090)
chr7 (104-224)||(32716489-32716606)
[»] chr5 (4 HSPs)
chr5 (107-321)||(40837975-40838186)
chr5 (96-224)||(32676610-32676736)
chr5 (96-214)||(38989237-38989351)
chr5 (261-321)||(38989134-38989195)
[»] chr4 (12 HSPs)
chr4 (96-315)||(17732834-17733055)
chr4 (96-321)||(40289031-40289253)
chr4 (107-319)||(45612316-45612530)
chr4 (96-232)||(31734556-31734688)
chr4 (258-321)||(54305841-54305904)
chr4 (183-231)||(3419998-3420046)
chr4 (139-231)||(658446-658537)
chr4 (275-321)||(18198691-18198737)
chr4 (277-321)||(55680921-55680965)
chr4 (273-321)||(658353-658401)
chr4 (258-306)||(29987892-29987940)
chr4 (275-319)||(44507913-44507957)
[»] chr2 (15 HSPs)
chr2 (96-313)||(26576122-26576340)
chr2 (104-321)||(34409459-34409675)
chr2 (108-220)||(44649945-44650056)
chr2 (96-321)||(9929692-9929937)
chr2 (96-227)||(27004096-27004228)
chr2 (104-319)||(4747960-4748173)
chr2 (258-313)||(32200726-32200781)
chr2 (183-321)||(13039025-13039164)
chr2 (96-150)||(32200870-32200924)
chr2 (266-321)||(41849228-41849283)
chr2 (96-150)||(13037369-13037423)
chr2 (184-225)||(32200816-32200857)
chr2 (261-321)||(17651476-17651536)
chr2 (262-320)||(18724623-18724681)
chr2 (185-229)||(15990038-15990082)
[»] chr1 (13 HSPs)
chr1 (104-321)||(32740918-32741131)
chr1 (98-321)||(23431930-23432155)
chr1 (106-219)||(126323-126435)
chr1 (104-231)||(48632550-48632676)
chr1 (96-228)||(9148970-9149099)
chr1 (96-161)||(18476567-18476633)
chr1 (185-315)||(18488357-18488488)
chr1 (104-176)||(3387724-3387796)
chr1 (266-321)||(48632463-48632516)
chr1 (108-229)||(7021538-7021661)
chr1 (262-314)||(126456-126508)
chr1 (277-321)||(3387883-3387927)
chr1 (273-313)||(3955178-3955218)
[»] chr8 (12 HSPs)
chr8 (108-227)||(28421114-28421231)
chr8 (96-215)||(44502352-44502469)
chr8 (96-226)||(15131941-15132069)
chr8 (105-229)||(1226126-1226248)
chr8 (187-321)||(15850342-15850478)
chr8 (137-225)||(18603044-18603130)
chr8 (259-321)||(15131843-15131905)
chr8 (96-157)||(15850496-15850557)
chr8 (104-176)||(18393572-18393644)
chr8 (273-321)||(31772664-31772712)
chr8 (283-321)||(28421288-28421326)
chr8 (104-151)||(37855229-37855276)
[»] scaffold0019 (1 HSPs)
scaffold0019 (180-229)||(70040-70089)
[»] scaffold0002 (1 HSPs)
scaffold0002 (275-321)||(289060-289106)
[»] scaffold0325 (1 HSPs)
scaffold0325 (104-209)||(12947-13051)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 96 - 321
Target Start/End: Complemental strand, 10516267 - 10516044
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |  || ||||||||| |||    
T  10516267 agatatcgtagtatttgaccattatttattcaactcctatcaaaaaggttaaaaatgttataataagctataatgtatat-taccccctaattgattaac 10516169  T
Q  196 atttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctgacacggctcgta 295  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||| ||||||||||||||||| ||||||    
T  10516168 attttttaaaacatatgtaactcttgtatctacggtacatggaagtaagagag-aaaaaatattttagatatttgcatgagttgtctgacacgactcgta 10516070  T
Q  296 tgagtgttatataggtgtcggacacc 321  Q
    ||||| ||||| ||||||||||||||    
T  10516069 tgagtattatacaggtgtcggacacc 10516044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 96 - 307
Target Start/End: Complemental strand, 10657539 - 10657329
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||| | |  ||||||||||||||||    
T  10657539 agatatcgtataatttgacctttatttattcaactcct-tcaaaaaagttaaaaatgttataatcatatgtaatgtattt-tagcctctaattgatcaac 10657442  T
Q  196 atttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagag-nnnnnnntattttagatatttgtatgagttgtctgacacggctcgt 294  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||        |||||||||||||| ||||||||||||||||||||||||    
T  10657441 atttttcaaaacatatgtaaatcttgtatctacggtacatggaagtaagagagaaaaaaaatattttagatatttatatgagttgtctgacacggctcgt 10657342  T
Q  295 atgagtgttatat 307  Q
    |||||||||||||    
T  10657341 atgagtgttatat 10657329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 96 - 315
Target Start/End: Original strand, 11410744 - 11410962
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctc-taattgatcaa 194  Q
    |||||||||||||||| ||||||||||||||| || |||||||||| | ||||| ||||||||||| |  ||||  || ||||||| | |||||||||||    
T  11410744 agatatcgtagtatttaacctttatttattcatctactatcaaaaaggctaaaactgttataatcaacaataat--atctattaccccctaattgatcaa 11410841  T
Q  195 catttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctgacacggctcgt 294  Q
    ||||| ||||||||||||||||||||||||||||||||  || |||||||||||       | |||| |||||||| || |||||||||||| |||||||    
T  11410842 catttctcaaaacatatgtaactcttgtatctacggtatgtggaagtaagagagaaaaaaatgttttcgatatttgcataagttgtctgacatggctcgt 11410941  T
Q  295 atgagtgttatataggtgtcg 315  Q
    |||||||||||||||||||||    
T  11410942 atgagtgttatataggtgtcg 11410962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 100 - 321
Target Start/End: Complemental strand, 43922040 - 43921824
Alignment:
Q  100 atcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacattt 199  Q
    |||||||||||||| ||||||||||||| ||  ||||||||||| |||||||||||||||||  |||||||  |  |||| | || ||||||||||||||    
T  43922040 atcgtagtatttgatctttatttattcatctaatatcaaaaaagctaaaaatgttataatcaattgtaatg--tcaattaaccctgattgatcaacattt 43921943  T
Q  200 ttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctgacacggctcgtatgag 299  Q
     |||||||||||||||||||||||||||| |||  || ||| |||||||       |  ||||||||||||| ||||||||| || |||| ||| |||||    
T  43921942 ctcaaaacatatgtaactcttgtatctactgtatgtggaagcaagagagaaaaaaatgctttagatatttgtctgagttgtccgaaacggttcg-atgag 43921844  T
Q  300 tgttatataggtgtcggacacc 321  Q
    |||  |||||||||||||||||    
T  43921843 tgt--tataggtgtcggacacc 43921824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 96 - 300
Target Start/End: Complemental strand, 21408961 - 21408750
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    |||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||||||  |||||||| | | |  || |||||||||||||    
T  21408961 agatatcgtagtatttgacctttatttattcatctactataaaaaaggttaaaaatgttataatcaattgtaatgtttgt-taccccctaattgatcaac 21408863  T
Q  196 atttttcaaa--------acatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctgacac 287  Q
    |||| |||||        |||||||||||||||||||||| | ||  || ||| |||||||       | |||||||||||||| ||||||||| |||||    
T  21408862 atttctcaaaacatatgtacatatgtaactcttgtatctaagttatgtggaagcaagagagaaaaaaatgttttagatatttgtttgagttgtccgacac 21408763  T
Q  288 ggctcgtatgagt 300  Q
    |||||||||||||    
T  21408762 ggctcgtatgagt 21408750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 313
Target Start/End: Original strand, 26565360 - 26565577
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagt-taaaaatgttataatcagctgtaatgtatatattac-ctctaattgatca 193  Q
    |||||||||||||||||| ||||||||  |||  | |  |||||||||  ||||||||||||||| | ||||||||| |||  ||| | |||| ||||||    
T  26565360 agatatcgtagtatttgatctttattttctcatttaccgtcaaaaaaggctaaaaatgttataattaactgtaatgtctat--tactccctaaatgatca 26565457  T
Q  194 acatttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctgacacggctcg 293  Q
    |||||| | |||||||||||||||||| |||||| | ||  || ||| |||||||       | |||||||||||||| ||||||||| |||||||||||    
T  26565458 acatttctaaaaacatatgtaactcttatatctaagatatgtggaagcaagagagaaaaaaatgttttagatatttgtctgagttgtccgacacggctcg 26565557  T
Q  294 tatgagtgttatataggtgt 313  Q
    ||||||||||||||||||||    
T  26565558 tatgagtgttatataggtgt 26565577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 14218476 - 14218595
Alignment:
Q  113 acctttatttattcaactcctatcaaaaaagt-taaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttcaaaacatat 211  Q
    ||||||||||||| | || |||| ||||||   ||||||||||||||||| ||||||||| ||| |  || ||||||||||||||||| |||||| ||||    
T  14218476 acctttatttatttatctactataaaaaaaaactaaaaatgttataatcaactgtaatgtctat-taccccctaattgatcaacatttatcaaaatatat 14218574  T
Q  212 gtaactcttgtatctacggta 232  Q
    || |||||||| |||||||||    
T  14218575 gtgactcttgtgtctacggta 14218595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 27044218 - 27044272
Alignment:
Q  267 tttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    ||||| ||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  27044218 tttgtctgagttgttcgacacggctcgtatgagtgttatacaggtgtcggacacc 27044272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 49861116 - 49861164
Alignment:
Q  183 ctaattgatcaacatttttcaaaacatatgtaactcttgtatctacggt 231  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||||||    
T  49861116 ctaattgatcaacatatctcaaaacttatgtaactcttgtatctacggt 49861164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 229
Target Start/End: Original strand, 27063816 - 27063933
Alignment:
Q  111 tgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttcaaaacata 210  Q
    ||||||||||||||||| || || ||| ||||| |||||||||| |||| | ||  ||| | ||||   |||  ||||||||||||||| |||| | |||    
T  27063816 tgacctttatttattcatctactgtcataaaagctaaaaatgttgtaattaacttaaatttctataactccta-aattgatcaacatttctcaacatata 27063914  T
Q  211 tgtaactcttgtatctacg 229  Q
    |||||||||| ||||||||    
T  27063915 tgtaactcttatatctacg 27063933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 2227314 - 2227278
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatcaaaa 140  Q
    |||||||||||||||||||||||| || |||||||||    
T  2227314 tagtatttgacctttatttattcatctactatcaaaa 2227278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 27109350 - 27109302
Alignment:
Q  183 ctaattgatcaacatttttcaaaacatatgtaactcttgtatctacggt 231  Q
    ||||||||||||||| |  ||||||||||||||| ||||||| ||||||    
T  27109350 ctaattgatcaacatatcacaaaacatatgtaacccttgtatttacggt 27109302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 27109732 - 27109700
Alignment:
Q  199 tttcaaaacatatgtaactcttgtatctacggt 231  Q
    |||||||||||||||||||||||||| ||||||    
T  27109732 tttcaaaacatatgtaactcttgtatttacggt 27109700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 96 - 319
Target Start/End: Original strand, 12843964 - 12844187
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||| |||||||||||||||||||||||| || |||||||||||| |||||||| |||||||| || |||||| ||||  ||| |||||||||||||    
T  12843964 agatatcatagtatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaactataatgtgtata--acccctaattgatcaac 12844061  T
Q  196 atttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagag--nnnnnnntattttagatatttgtatgagttgtctgacacggctcg 293  Q
    |||| ||||||||||||||||||||||||||| ||| | || ||| |||||||         | |||||||||| ||| ||||||||||||||| |||||    
T  12844062 atttctcaaaacatatgtaactcttgtatctatggtgcgtggaagcaagagagaaaaaatattgttttagatatctgtgtgagttgtctgacacagctcg 12844161  T
Q  294 tatgagtgttatataggtgtcggaca 319  Q
    ||||||||||||||| ||||| ||||    
T  12844162 tatgagtgttatataagtgtcagaca 12844187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 321
Target Start/End: Complemental strand, 14494538 - 14494316
Alignment:
Q  98 atatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacat 197  Q
    ||||| |||||||||||||||||||||||  ||  |||||||||||||||||||| |||||||| || | |||| ||||  ||| |||||||||||||||    
T  14494538 atatcatagtatttgacctttatttattcgtctattatcaaaaaagttaaaaatgatataatcaactatgatgtctata--acccctaattgatcaacat 14494441  T
Q  198 ttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagag-nnnnnnntattttagatatttgtatgagttgtctgacacggctcgtat 296  Q
    || ||||||||||||||| ||||||||||| |||   || ||  || ||||        | ||| |||||||||| ||||||||| ||||||||||||||    
T  14494440 ttctcaaaacatatgtaattcttgtatctatggtgtgtggaaacaatagagaaaacaattgtttaagatatttgtgtgagttgtccgacacggctcgtat 14494341  T
Q  297 gagtgttatataggtgtcggacacc 321  Q
     ||||||||||||||||||||||||    
T  14494340 tagtgttatataggtgtcggacacc 14494316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 314
Target Start/End: Original strand, 17540078 - 17540295
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||| |||||||||||||||||||||| | || |||||||||||| |||||||| |||||||| || |||  | ||||  ||| |||||||||||||    
T  17540078 agatatcatagtatttgacctttatttatttatctactatcaaaaaagctaaaaatgatataatcaactataacttttata--acccctaattgatcaac 17540175  T
Q  196 atttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagag-nnnnnnntattttagatatttgtatgagttgtctgacacggctcgt 294  Q
    |||| ||||||||||||||||||||||||||| |||    | ||| |||||||        | |||||||||||||| ||||||||| ||||||| || |    
T  17540176 atttctcaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagagaaaaaaattgttttagatatttgtctgagttgtccgacacggttcat 17540275  T
Q  295 atgagtgttatataggtgtc 314  Q
    ||||||||||||||||||||    
T  17540276 atgagtgttatataggtgtc 17540295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 319
Target Start/End: Original strand, 57082 - 57280
Alignment:
Q  121 ttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttcaaaacatatgtaactctt 220  Q
    ||||||| || |||||||||||| ||||||||||||||||| || |||||| ||||   |||||| ||||||||||||| || |||||||||||||||||    
T  57082 ttattcatctactatcaaaaaaggtaaaaatgttataatcaactttaatgtctataac-cctctagttgatcaacatttctccaaacatatgtaactctt 57180  T
Q  221 gtatctacggtacatgaaagtaagagag-nnnnnnntattttagatatttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcggaca 319  Q
    ||||||||||||  || ||| |||||||        || ||||||||||| | | ||||||| |||||||||||||||||||||| ||||||||| ||||    
T  57181 gtatctacggtatgtggaagcaagagagaaaaataataatttagatatttatcttagttgtccgacacggctcgtatgagtgttacataggtgtcagaca 57280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 1255763 - 1255633
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||||||||||||||| |||||||||  | || |||||||||||| ||||||||||||||||| ||||||||| ||||   || |||||||||||||    
T  1255763 agatatcgtagtatttgacatttatttatgtatctgctatcaaaaaagctaaaaatgttataatcaactgtaatgtctata-accccctaattgatcaac 1255665  T
Q  196 atttttcaaaacatatgtaactcttgtatcta 227  Q
    |||  ||||||| |||||| ||||||||||||    
T  1255664 attcctcaaaacctatgtagctcttgtatcta 1255633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 19294551 - 19294614
Alignment:
Q  258 ttttagatatttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    |||||||||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||    
T  19294551 ttttagatatttgtgtgacttgtccgacacggctcgtatgagtgttatacaggtgtcggacacc 19294614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 320
Target Start/End: Original strand, 34709064 - 34709238
Alignment:
Q  147 aaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagag 246  Q
    |||||| |||||||| || |||||||||||  ||| |||||||||||||||||||||||| |||| |||||||| |||||| ||    |||||| |||||    
T  34709064 aaaatgatataatcaactataatgtatata--acccctaattgatcaacatttttcaaaatatatataactcttatatctatggcgtgtgaaagcaagag 34709161  T
Q  247 agnnnnnnnta-ttttagatatttgtatgagttgtctgacacggctcg--tatgagtgttatataggtgtcggacac 320  Q
    ||       || || ||||||||||| | |||| || |||||  ||||  |||||||||||||||||||||||||||    
T  34709162 agaaaaaagtagttgtagatatttgtgtaagttttccgacacaactcgtatatgagtgttatataggtgtcggacac 34709238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 34011128 - 34011084
Alignment:
Q  277 ttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34011128 ttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 34011084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 34013722 - 34013766
Alignment:
Q  277 ttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34013722 ttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 34013766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 19542201 - 19542332
Alignment:
Q  98 atatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacat 197  Q
    ||||| ||||||||| |||||||||||||| || ||||||| || | ||||| ||||||||||| || |||  ||| | | |||  |||||| |||| ||    
T  19542201 atatcttagtatttgtcctttatttattcatctactatcaagaatgctaaaattgttataatcaactttaa--tatctctaacccttaattgttcaatat 19542298  T
Q  198 ttttcaaaacatatgtaactcttgtatctacggt 231  Q
    || |||||||| ||||||||||||||| ||||||    
T  19542299 ttctcaaaacaaatgtaactcttgtatgtacggt 19542332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 19294443 - 19294497
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaa 150  Q
    ||||||| |||||||||||||||||||||||| || |||| ||||||| ||||||    
T  19294443 agatatcatagtatttgacctttatttattcatctactatgaaaaaagctaaaaa 19294497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 14998622 - 14998569
Alignment:
Q  266 atttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcggaca 319  Q
    |||||| | |||||||||||||  |||||||||||||| |||||||||| ||||    
T  14998622 atttgtctaagttgtctgacacccctcgtatgagtgttgtataggtgtcagaca 14998569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 34708989 - 34709034
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaa 141  Q
    ||||||| |||||||||||||||||||||||| || |||| |||||    
T  34708989 agatatcatagtatttgacctttatttattcatctactataaaaaa 34709034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 96 - 314
Target Start/End: Complemental strand, 37338864 - 37338649
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| |||| || |||||| || |  | | |||||||||||||    
T  37338864 agatatcatagtatttgacctttatttattcatctactatcaaaaaagttaaaaatgttattatcaactttaatgtttaaa--atccctaattgatcaac 37338767  T
Q  196 atttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctgacacggctcgta 295  Q
    |||| ||||| ||||||||||||||||||||||||||  || ||| |||||||       | ||| |||||||||| ||||||||||| |||| ||||||    
T  37338766 atttctcaaagcatatgtaactcttgtatctacggtatgtggaagcaagagag-aaaaaatgtttcagatatttgtctgagttgtctgtcacgactcgta 37338668  T
Q  296 tgagtgttatataggtgtc 314  Q
    ||||| |||||||| ||||    
T  37338667 tgagtattatatagatgtc 37338649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 46532915 - 46533044
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||| |||||||||||||| || |||||||| || || ||||||||| |||||||||||||||||  |||||||| ||||  ||| |||||||||||||    
T  46532915 agataacgtagtatttgaccattgtttattcacctgctgtcaaaaaagctaaaaatgttataatcaattgtaatgtttata--acccctaattgatcaac 46533012  T
Q  196 atttttcaaaacatatgtaactcttgtatcta 227  Q
    |||  |||||| ||||||| ||||||||||||    
T  46533013 attcctcaaaatatatgtagctcttgtatcta 46533044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 321
Target Start/End: Original strand, 10678433 - 10678576
Alignment:
Q  177 ttacctctaattgatcaacatttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgag 276  Q
    ||||| |||||||||||| |||| |||||||||| |||||||||||||||||||||  || ||| ||||||        | ||| | |||||||| ||||    
T  10678433 ttacccctaattgatcaatatttctcaaaacatacgtaactcttgtatctacggtatgtggaagcaagagaaaaagaaatgtttaa-atatttgtctgag 10678531  T
Q  277 ttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||    
T  10678532 ttgtcagacacggttcgtatgagtgttatataggtgtcggacacc 10678576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 44572559 - 44572486
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatat 177  Q
    |||||||||||||||||||||||| || |||||||||||| |||||||| ||||||||  ||||||||||||||    
T  44572559 tagtatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaattgtaatgtatatat 44572486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 45215961 - 45215898
Alignment:
Q  258 ttttagatatttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    |||||||||||||  || |||||| |||||||||||||||||||||| ||||||||||||||||    
T  45215961 ttttagatatttgactgggttgtccgacacggctcgtatgagtgttacataggtgtcggacacc 45215898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 27616386 - 27616466
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatata 176  Q
    ||||||| ||||||||||| ||||||||| || || |||||| ||||| ||||||||||||||||| || |||||| ||||    
T  27616386 agatatcatagtatttgacttttatttatacatctactatcagaaaagctaaaaatgttataatcaactttaatgtctata 27616466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 45216053 - 45215999
Alignment:
Q  107 tatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatca 161  Q
    ||||||||||||||||||||| || || ||||||||| |||||||| ||||||||    
T  45216053 tatttgacctttatttattcatctactgtcaaaaaagctaaaaatgatataatca 45215999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 6439808 - 6439865
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatca 161  Q
    ||||||||||| | ||||||||||||| ||||| |||||| |||||||||| ||||||    
T  6439808 tagtatttgacatctatttattcaactactatcgaaaaagataaaaatgttgtaatca 6439865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 22290923 - 22290988
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatca 161  Q
    ||||||| | |||||||||||||||||||| | || |||||||||||| |||||||  ||||||||    
T  22290923 agatatcattgtatttgacctttatttattaatctactatcaaaaaagctaaaaattatataatca 22290988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 22291029 - 22291090
Alignment:
Q  256 tattttagatatttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcgga 317  Q
    ||||||||||| ||||  ||||||||  |||||||||||||||||| |||||| ||||||||    
T  22291029 tattttagataattgtgcgagttgtcctacacggctcgtatgagtggtatatacgtgtcgga 22291090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 32716606 - 32716489
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttca 203  Q
    |||||||||| ||||||||||||| |  ||||| ||||||||||||||| |  |||||  | |||||| |||| | ||||  ||| ||||| |||| |||    
T  32716606 tagtatttgatctttatttattcatccactatcgaaaaagttaaaaatggtgcaatcaattttaatgtctataatccctc--att-atcaaaatttctca 32716510  T
Q  204 aaacatatgtaactcttgtat 224  Q
    | | |||||||||||||||||    
T  32716509 atatatatgtaactcttgtat 32716489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 107 - 321
Target Start/End: Original strand, 40837975 - 40838186
Alignment:
Q  107 tatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttcaaaa 206  Q
    ||||||||||||||||||||| || |||||||||| | ||||||||||||||| | || |||||| |||  |||| ||||||||||||||||| ||||||    
T  40837975 tatttgacctttatttattcatctactatcaaaaa-gctaaaaatgttataataaactataatgtttat--tacccctaattgatcaacatttctcaaaa 40838071  T
Q  207 catatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctgacacggctcgtatgagtgttata 306  Q
    ||||||||||||||||||||||||||  || ||| |||||         | ||||||| |||||| ||||||||| |||||| || ||||||||||||||    
T  40838072 catatgtaactcttgtatctacggtatctggaagcaagaggaaaaaaaatgttttagacatttgtctgagttgtccgacacgacttgtatgagtgttata 40838171  T
Q  307 taggtgtcggacacc 321  Q
    ||| |||||||||||    
T  40838172 tagatgtcggacacc 40838186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 224
Target Start/End: Complemental strand, 32676736 - 32676610
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||| || ||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| || |||||| |||| | || |||||||| ||||    
T  32676736 agatatcatattatttgatctt-atttattcatctactatcaaaaaagttaaaaatgttataatcaactttaatgtctata-tccccctaattgaacaac 32676639  T
Q  196 atttttcaaaacatatgtaactcttgtat 224  Q
    |||| ||||||||||||||||||||||||    
T  32676638 atttctcaaaacatatgtaactcttgtat 32676610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 38989351 - 38989237
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||| ||||||||||| |||||||||||| || ||||||||| | ||||||||| ||||||||    |||||| ||||  ||| |||||||||||||    
T  38989351 agatatcatagtatttgacttttatttattcatctactatcaaaagatttaaaaatgatataatca--aataatgtctata--acccctaattgatcaac 38989256  T
Q  196 atttttcaaaacatatgta 214  Q
    |||| || |||||||||||    
T  38989255 atttatcgaaacatatgta 38989237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 38989195 - 38989134
Alignment:
Q  261 tagatatttgtatgagtt-gtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    ||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||| |||||    
T  38989195 tagatatttgtctgagtttgtccgacacggctcgtatgagtgttatatagttgtcgaacacc 38989134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 96 - 315
Target Start/End: Original strand, 17732834 - 17733055
Alignment:
Q  96 agatatcgtagtatttgaccttt-atttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacct-ctaattgatca 193  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||||| ||||||||||||||||| ||||||||  | |||||||| |||||| ||||    
T  17732834 agatatcgtagtatttgaccttttatttattcatctactatcaaaaaagctaaaaatgttataatcaactgtaatg--tctattacctcctaattaatca 17732931  T
Q  194 acatttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagag--nnnnnnntattttagatatttgtatgagttgtctgacacggct 291  Q
    |||||| |||||||| |||||||||||||||||||| ||  || ||| |||||||         | ||| | ||||||||  |||||||| |||||||||    
T  17732932 acatttctcaaaacacatgtaactcttgtatctacgatatgtggaagcaagagagaaaaaaaaatgtttcatatatttgtcagagttgtccgacacggct 17733031  T
Q  292 cgtatgagtgttatataggtgtcg 315  Q
    ||||||| ||||||| ||||||||    
T  17733032 cgtatgaatgttatagaggtgtcg 17733055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 96 - 321
Target Start/End: Complemental strand, 40289253 - 40289031
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||| |||||||||||||||||||||||| || |||||||||||  |||||||    ||||||  |||||||| || |  ||| ||||||||| |||    
T  40289253 agatatcatagtatttgacctttatttattcatctactatcaaaaaaactaaaaataacttaatcaattgtaatgtctaca--acccctaattgattaac 40289156  T
Q  196 atttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctgacacggctcgta 295  Q
    |||| ||||||||||||||| ||||||||||| |||   || ||| |||||||       | |||||||||||||| ||||||||| |||| | ||||||    
T  40289155 atttctcaaaacatatgtaaatcttgtatctatggtgtgtggaagcaagagagaaaaaa-tgttttagatatttgtttgagttgtccgacatgactcgta 40289057  T
Q  296 tgagtgttatataggtgtcggacacc 321  Q
    ||||||||||||||||||||||||||    
T  40289056 tgagtgttatataggtgtcggacacc 40289031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 107 - 319
Target Start/End: Complemental strand, 45612530 - 45612316
Alignment:
Q  107 tatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttc-aaa 205  Q
    ||||||||||||||||||||| || |||||||||||| |||||||| |||||||| || |||||| ||||  | | || ||| |||||||||| || |||    
T  45612530 tatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaactataatgtctata--aacccttattaatcaacatttctcaaaa 45612433  T
Q  206 acatatgtaactcttgtatctacggtacatgaaagtaagagag---nnnnnnntattttagatatttgtatgagttgtctgacacggctcgtatgagtgt 302  Q
    |||||||||||||||||||||| |||    | ||| |||||||          | |||||||||||||| ||||||||| |||||| |||||||||||||    
T  45612432 acatatgtaactcttgtatctatggtgtgcggaagcaagagagaaaaaaaaattgttttagatatttgtttgagttgtccgacacgactcgtatgagtgt 45612333  T
Q  303 tatataggtgtcggaca 319  Q
    |||| ||||||||||||    
T  45612332 tatacaggtgtcggaca 45612316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 31734556 - 31734688
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||||||||||||  |||||||||||||| || ||||||||| || ||||||||||||||||| || |||||| |||  |||| | |  ||||||||    
T  31734556 agatatcgtagtatttt-cctttatttattcatctactatcaaaagagctaaaaatgttataatcaactataatgtctat--tacccc-atgtgatcaac 31734651  T
Q  196 atttttcaaaacatatgtaactcttgtatctacggta 232  Q
    |||| ||||||||||||||||||||||||||||||||    
T  31734652 atttctcaaaacatatgtaactcttgtatctacggta 31734688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 54305841 - 54305904
Alignment:
Q  258 ttttagatatttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  54305841 ttttagatatttgtgtgagttgtctgacacggctcgtatgagtgttgtataggtgttggacacc 54305904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 3419998 - 3420046
Alignment:
Q  183 ctaattgatcaacatttttcaaaacatatgtaactcttgtatctacggt 231  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3419998 ctaattgatcaacatttctcaaaacatatgtaactcttgtatctacggt 3420046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 658537 - 658446
Alignment:
Q  139 aaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttcaaaacatatgtaactcttgtatctacggt 231  Q
    |||||||||||||||| |||||| ||  ||| | ||||  |||| |||||| |||||||||||||  ||||||||||||||||| ||||||||    
T  658537 aaaagttaaaaatgttgtaatcaacttaaatttctataa-acctttaattgttcaacatttttcagcacatatgtaactcttgtttctacggt 658446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 18198737 - 18198691
Alignment:
Q  275 agttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||    
T  18198737 agttgtctgatatgtctcgtatgagtgttatataggtgtcggacacc 18198691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 55680921 - 55680965
Alignment:
Q  277 ttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||    
T  55680921 ttgtttgacacagctcgtatgagtgttacataggtgtcggacacc 55680965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 658401 - 658353
Alignment:
Q  273 tgagttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    ||||||||  || ||||||||| |||||||| |||||||||||||||||    
T  658401 tgagttgttcgaaacggctcgtttgagtgttgtataggtgtcggacacc 658353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 29987892 - 29987940
Alignment:
Q  258 ttttagatatttgtatgagttgtctgacacggctcgtatgagtgttata 306  Q
    |||||||||||||| |||||||||  ||||  |||||||||||||||||    
T  29987892 ttttagatatttgtttgagttgtccaacacatctcgtatgagtgttata 29987940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 44507913 - 44507957
Alignment:
Q  275 agttgtctgacacggctcgtatgagtgttatataggtgtcggaca 319  Q
    ||||||| |||||| ||||||||||||||||||| ||||| ||||    
T  44507913 agttgtccgacacgtctcgtatgagtgttatatatgtgtcagaca 44507957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 96 - 313
Target Start/End: Original strand, 26576122 - 26576340
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||| |||||||||||||||||||||||| || |||||||| ||| |||||| | |||||||| || |||||| ||||  ||| ||||| |||||||    
T  26576122 agatatcatagtatttgacctttatttattcatctactatcaaataagctaaaaacgatataatcaactataatgtctata--accactaatcgatcaac 26576219  T
Q  196 atttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagag---nnnnnnntattttagatatttgtatgagttgtctgacacggctc 292  Q
    |||| ||||||||||||||||||||||||||| |||    | ||| |||||||          | ||||| |||||||| ||||||||| ||||||||||    
T  26576220 atttctcaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagagagaaaaaatttgttttaaatatttgtttgagttgtccgacacggctc 26576319  T
Q  293 gtatgagtgttatataggtgt 313  Q
    |||||||||||||||||||||    
T  26576320 gtatgagtgttatataggtgt 26576340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 104 - 321
Target Start/End: Complemental strand, 34409675 - 34409459
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatca-aaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttc 202  Q
    |||||||||||||||||||||| | || |  ||| |||||| |||||||| |||||||| || |||||| ||||  ||| ||||||||||||||||| ||    
T  34409675 tagtatttgacctttatttatttatctaccgtcagaaaaagctaaaaatgatataatcaactataatgtctata--acccctaattgatcaacatttctc 34409578  T
Q  203 aaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctgacacggctcgtatgagtgt 302  Q
    ||||||||||||||||||||||||| |||    | ||  |||||||       | ||||||||| |||| ||||||||   ||||  |||||||||||||    
T  34409577 aaaacatatgtaactcttgtatctatggtgtgcggaatcaagagagagaaaattgttttagatagttgtttgagttgttcaacacaactcgtatgagtgt 34409478  T
Q  303 tatataggtgtcggacacc 321  Q
    |||||||||||||||||||    
T  34409477 tatataggtgtcggacacc 34409459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 44650056 - 44649945
Alignment:
Q  108 atttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttcaaaac 207  Q
    |||||||||||||||||||| || ||||||||||||||||||||||| |||||| || |||| | ||||   || |||||||||||||||||||||| ||    
T  44650056 atttgacctttatttattcatctactatcaaaaaagttaaaaatgttgtaatcaactttaatttctata-agcccctaattgatcaacatttttcaacac 44649958  T
Q  208 atatgtaactctt 220  Q
    |||| ||||||||    
T  44649957 atatataactctt 44649945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 321
Target Start/End: Original strand, 9929692 - 9929937
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatata----------------tta 179  Q
    ||||||| |||||||||||||||||||||||| || |||||||||| | | |||||| ||| |||| ||||||||| ||||                | |    
T  9929692 agatatcatagtatttgacctttatttattcatctactatcaaaaatgctcaaaatgatatgatcaactgtaatgtctataacccctgtaatgtctataa 9929791  T
Q  180 cctctaattgatcaacatttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnn----tattttagatatttgtatga 275  Q
    || ||| ||||||||||||| ||||||||||||||||||||||||||| |||   || ||| |||| ||           ||||||||||||||||  ||    
T  9929792 cccctatttgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgtggaagcaagatagaaaaaaaaacttattttagatatttgtcaga 9929891  T
Q  276 gttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||    
T  9929892 gttgtttgacacggctggtatgagtgttatataggtgtcggacacc 9929937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 27004096 - 27004228
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagt---taaaaatgttataatcagctgtaatgtatatattacctctaattgatc 192  Q
    ||||||| |||||||||||||||||||||||| || || | ||||||     |||||||| |||||||| || ||||||| |||  ||| ||||||||||    
T  27004096 agatatcatagtatttgacctttatttattcatctactgtaaaaaaaaaaactaaaaatgatataatcaactataatgtacata--acccctaattgatc 27004193  T
Q  193 aacatttttcaaaacatatgtaactcttgtatcta 227  Q
    |||||||||||||||||||  ||||||||||||||    
T  27004194 aacatttttcaaaacatatacaactcttgtatcta 27004228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 319
Target Start/End: Complemental strand, 4748173 - 4747960
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttca 203  Q
    |||||||||||||||||||||||| || ||||  || ||  |||||||| | |||||| || |||||| | ||| ||| || | |||||||||  |||||    
T  4748173 tagtatttgacctttatttattcatcttctattgaacaaactaaaaatgctgtaatcaactttaatgtctctataacccctcagtgatcaaca--tttca 4748076  T
Q  204 aaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctgacacggctcgtatgagtgtt 303  Q
     |||| |||||||||||| |||||||||   || ||| || || |         ||| ||| |||||| | ||||||| || | ||||||||||||||||    
T  4748075 caacacatgtaactcttggatctacggtgtgtggaagcaatagtgaaaaaaaagtttcagacatttgtctcagttgtccgagatggctcgtatgagtgtt 4747976  T
Q  304 atataggtgtcggaca 319  Q
    ||||||||||||||||    
T  4747975 atataggtgtcggaca 4747960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 32200781 - 32200726
Alignment:
Q  258 ttttagatatttgtatgagttgtctgacacggctcgtatgagtgttatataggtgt 313  Q
    |||||||||||| | ||||||||| |||||||||||||||| ||||||||||||||    
T  32200781 ttttagatatttttctgagttgtccgacacggctcgtatgactgttatataggtgt 32200726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 321
Target Start/End: Original strand, 13039025 - 13039164
Alignment:
Q  183 ctaattgatcaacatttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagaga-gnnnnnnntattttagatatttgtatgagttgtc 281  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||| |||    | ||| ||||||         | |||||||||||||| |||| ||||    
T  13039025 ctaattgatcaacatttctcataacatatgtaactcttgtatctatggtgtgcggaagcaagagataaaaaaattgttttagatatttgtctgagctgtc 13039124  T
Q  282 tgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    ||||||  ||| ||||||||||||| | ||||||||||||    
T  13039125 tgacacaactcatatgagtgttataaatgtgtcggacacc 13039164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 32200924 - 32200870
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaa 150  Q
    ||||||| |||||||||||||||||||||||| || |||||||||||| ||||||    
T  32200924 agatatcatagtatttgacctttatttattcatctactatcaaaaaagctaaaaa 32200870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 41849228 - 41849283
Alignment:
Q  266 atttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    |||||| ||||||||| |||||| ||| ||| ||||||||||||||||||||||||    
T  41849228 atttgtttgagttgtccgacacgcctcatataagtgttatataggtgtcggacacc 41849283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 13037369 - 13037423
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaa 150  Q
    ||||||| |||||||||| ||||||||||||| || ||||||||||| |||||||    
T  13037369 agatatcatagtatttgatctttatttattcatctactatcaaaaaaattaaaaa 13037423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 32200857 - 32200816
Alignment:
Q  184 taattgatcaacatttttcaaaacatatgtaactcttgtatc 225  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  32200857 taattgatcagcatttctcaaaacatatgtaactcttgtatc 32200816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 17651476 - 17651536
Alignment:
Q  261 tagatatttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    ||||||||||| | ||||||| |||||| ||| ||| ||||||||||| ||||||||||||    
T  17651476 tagatatttgtctaagttgtccgacacgcctcatataagtgttatataagtgtcggacacc 17651536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 18724681 - 18724623
Alignment:
Q  262 agatatttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcggacac 320  Q
    |||||||||| |||||||||||||||| ||| | | |||| |||||||||||| |||||    
T  18724681 agatatttgtctgagttgtctgacacgcctcttttaagtgatatataggtgtcagacac 18724623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 15990082 - 15990038
Alignment:
Q  185 aattgatcaacatttttcaaaacatatgtaactcttgtatctacg 229  Q
    ||||| ||||||||| |||| ||||||||||||||| ||||||||    
T  15990082 aattggtcaacatttctcaacacatatgtaactcttatatctacg 15990038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 321
Target Start/End: Original strand, 32740918 - 32741131
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttca 203  Q
    |||||||||||||||||||||||| || | |||||||||| ||||||||  |||||||  |||||||| ||||  ||| | |||||||||||||||  ||    
T  32740918 tagtatttgacctttatttattcatctaccatcaaaaaagctaaaaatg--ataatcaattgtaatgtctata--acccccaattgatcaacatttcaca 32741013  T
Q  204 aaacatatgtaactcttgtatctacggtacatgaaagtaagagag-nnnnnnntattttagatatttgtatgagttgtctgacacggctcgtatgagtgt 302  Q
    |||||||||||||||||||||||| |||   || ||| |||||||        | |||||||||||||  |||||||| |||||||||||| || |||||    
T  32741014 aaacatatgtaactcttgtatctatggtgtgtggaagcaagagagaaaaaaattgttttagatatttgcctgagttgtttgacacggctcgcataagtgt 32741113  T
Q  303 tatataggtgtcggacacc 321  Q
    |||||| ||||||||||||    
T  32741114 tatata-gtgtcggacacc 32741131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 321
Target Start/End: Original strand, 23431930 - 23432155
Alignment:
Q  98 atatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtata-----tatta-cctctaattgat 191  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||||||||  | ||||||| ||     ||||| || ||||||| |    
T  23431930 atatcgtagtatttgacattcatttattcatctactatcaaaaaagttaaaaatgttataatctacggtaatgtctattgtctattaccccctaattgtt 23432029  T
Q  192 caacatttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctgacacggct 291  Q
    | ||| || |||||||||||||||||||||||||| | |||  || || | |||||        | || ||||||||| | ||||||||| |||||||||    
T  23432030 c-acacttctcaaaacatatgtaactcttgtatcttctgtatgtggaaatgagaga---aaaaatgttctagatatttatctgagttgtccgacacggct 23432125  T
Q  292 cgtatgagtgttatataggtgtcggacacc 321  Q
    ||||||||||||||||| ||||||||||||    
T  23432126 cgtatgagtgttatataagtgtcggacacc 23432155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 126323 - 126435
Alignment:
Q  106 gtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttcaaa 205  Q
    |||||||||||||||||||||| || |||| |||| |||||||||||||||||||| || |||||| ||||   || ||||||||||||||||| |||||    
T  126323 gtatttgacctttatttattcatctactattaaaa-agttaaaaatgttataatcaactttaatgtctataacccccctaattgatcaacatttctcaaa 126421  T
Q  206 acatatgtaactct 219  Q
    ||||||||||||||    
T  126422 acatatgtaactct 126435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 48632676 - 48632550
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctc-taattgatcaacatttttc 202  Q
    |||||||||||||||||||||||  || |||||||||||| |||||| ||| |||||| || |||| | ||||  ||| | |||||||||||||||| ||    
T  48632676 tagtatttgacctttatttattcttctactatcaaaaaagctaaaaacgttgtaatcaactttaatttctata--accccgtaattgatcaacatttctc 48632579  T
Q  203 aaaacatatgtaactcttgtatctacggt 231  Q
    || ||||||| ||||||||||||||||||    
T  48632578 aacacatatgcaactcttgtatctacggt 48632550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 9149099 - 9148970
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||| |||||||| ||||||||||||| | || |||||||||||| |||||||||||||  || || |||||| ||||  ||| | |||||||| ||    
T  9149099 agatatcatagtattttacctttatttatttatctactatcaaaaaagctaaaaatgttatagccaactttaatgtctata--accaccaattgatctac 9149002  T
Q  196 atttttcaaaacatatgtaactcttgtatctac 228  Q
    |||| |  || |||| |||||||||||||||||    
T  9149001 atttct-taatcatacgtaactcttgtatctac 9148970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 18476567 - 18476633
Alignment:
Q  96 agatatcgtagtatttgaccttt-atttattcaactcctatcaaaaaagttaaaaatgttataatca 161  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||||| ||||||| || ||||||    
T  18476567 agatatcgtagtatttgaccttttatttattcatctactatcaaaaaagctaaaaatattgtaatca 18476633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 315
Target Start/End: Original strand, 18488357 - 18488488
Alignment:
Q  185 aattgatcaacatttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnn-tattttagatatttgtatgagttgtctg 283  Q
    |||| |||||||||| |||||||| |||||||||||| ||||||| ||  || ||| |||||||        | ||| | ||||||||  |||||||| |    
T  18488357 aattaatcaacatttctcaaaacacatgtaactcttggatctacgatatgtggaagcaagagagaaaaaaaatgtttcatatatttgtcagagttgtccg 18488456  T
Q  284 acacggctcgtatgagtgttatataggtgtcg 315  Q
    ||| ||||||||||| ||||||||||||||||    
T  18488457 acatggctcgtatgaatgttatataggtgtcg 18488488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 3387724 - 3387796
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatata 176  Q
    |||||||||||||||||||||||| || | ||| ||||| ||||||| ||| |||||| || |||||| ||||    
T  3387724 tagtatttgacctttatttattcatctaccatcgaaaaatttaaaaacgttgtaatcaactttaatgtctata 3387796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 48632516 - 48632463
Alignment:
Q  266 atttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    |||||| |||||||||||||| ||||||| |||||||  |||||||||||||||||    
T  48632516 atttgtttgagttgtctgacatggctcgtgtgagtgt--tataggtgtcggacacc 48632463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 7021661 - 7021538
Alignment:
Q  108 atttgacctttatttattcaactcctatcaaaaaa-gttaaaaatgttataatcagctgtaatgtatatattacct-ctaattgatcaacatttttcaaa 205  Q
    |||||||||||||||||| | || ||||||||||| |  ||||||||| |||||| || ||   | | ||| |||  |||||| |||||||||| ||||     
T  7021661 atttgacctttatttatttatctactatcaaaaaaagccaaaaatgttgtaatcaactttataatttctataacccgctaatttatcaacatttctcaac 7021562  T
Q  206 acatatgtaactcttgtatctacg 229  Q
    ||||||||||||||| ||||||||    
T  7021561 acatatgtaactcttatatctacg 7021538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 126456 - 126508
Alignment:
Q  262 agatatttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtc 314  Q
    |||||||||| | || ||||  |||||||||||||||||||||||| ||||||    
T  126456 agatatttgtctaagctgtccaacacggctcgtatgagtgttatatgggtgtc 126508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 3387883 - 3387927
Alignment:
Q  277 ttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    ||||| |||||| ||| |||||||||||||||||||| |||||||    
T  3387883 ttgtcggacacgtctcatatgagtgttatataggtgttggacacc 3387927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 3955178 - 3955218
Alignment:
Q  273 tgagttgtctgacacggctcgtatgagtgttatataggtgt 313  Q
    |||||||| ||||||| ||||||||||||||||||| ||||    
T  3955178 tgagttgtttgacacgcctcgtatgagtgttatataagtgt 3955218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 28421114 - 28421231
Alignment:
Q  108 atttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttcaaaac 207  Q
    |||||||||||||||||||| || |||||||||||| |||||| | |||||||| || |||||| ||||  ||| |||||||||||| |||| ||||||     
T  28421114 atttgacctttatttattcatctactatcaaaaaagctaaaaacgatataatcaactataatgtctata--accactaattgatcaagatttctcaaaat 28421211  T
Q  208 atatgtaactcttgtatcta 227  Q
    ||||||||||||||||||||    
T  28421212 atatgtaactcttgtatcta 28421231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 44502352 - 44502469
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||| || ||||||||||||||||||||| || ||||||||||||||||||||  |||||||| || |||||| ||||  ||| |||||  ||||||    
T  44502352 agatatcatactatttgacctttatttattcatctgctatcaaaaaagttaaaaataatataatcaactataatgtctata--acccctaatcaatcaac 44502449  T
Q  196 atttttcaaaacatatgtaa 215  Q
    |||| |||||||||||||||    
T  44502450 atttctcaaaacatatgtaa 44502469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 226
Target Start/End: Complemental strand, 15132069 - 15131941
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaac 195  Q
    ||||||| |||||||||| ||||||||||| | || ||||| |||||| |||||||| |||||||| || |||||| ||||  ||| ||||||||||||     
T  15132069 agatatcatagtatttgatctttatttatttatctactatcgaaaaagctaaaaatgatataatcaactataatgtctata--acccctaattgatcaat 15131972  T
Q  196 atttttcaaaacatatgtaactcttgtatct 226  Q
    |||| | |||||||||||||||| |||||||    
T  15131971 atttctaaaaacatatgtaactcctgtatct 15131941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 1226126 - 1226248
Alignment:
Q  105 agtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttcaa 204  Q
    ||||||||| ||||||||||||| || ||||||||||  ||||||||||| |||||| || |||| | ||||  ||||||||||||| ||||||| ||||    
T  1226126 agtatttgatctttatttattcatctactatcaaaaat-ttaaaaatgttgtaatcaactttaatttctataa-acctctaattgattaacatttctcaa 1226223  T
Q  205 aacatatgtaactcttgtatctacg 229  Q
     |||||| |||||||||||||||||    
T  1226224 cacatatttaactcttgtatctacg 1226248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 321
Target Start/End: Complemental strand, 15850478 - 15850342
Alignment:
Q  187 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggtacatgaaagtaagagagnnnnnnntattttagatatttgtatgagttgtctg--a 284  Q
    |||||||||||||||||||||||||||||||||||||||||||| |  || ||| |||||||       ||||| ||||||| || | ||||||| |  |    
T  15850478 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagaaaaaaatatttcagatattcgtcttagttgtccgaca 15850379  T
Q  285 cacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    |||||||| ||| ||||||||||||||||| ||||||    
T  15850378 cacggctcttataagtgttatataggtgtcagacacc 15850342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 18603130 - 18603044
Alignment:
Q  137 aaaaaagttaaaaatgttataatcagctgtaatgtatatattacctctaattgatcaacatttttcaaaacatatgtaactcttgtatc 225  Q
    ||||||| |||||||||||||||||  ||||||||  || | ||| ||||||||||||||||| |||||||||||||||||||||||||    
T  18603130 aaaaaagctaaaaatgttataatcaattgtaatgtcaat-tcacc-ctaattgatcaacatttctcaaaacatatgtaactcttgtatc 18603044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 15131905 - 15131843
Alignment:
Q  259 tttagatatttgtatgagttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    ||||||||||||| ||||||||  ||||| |||| ||||||||||||||||||||||||||||    
T  15131905 tttagatatttgtctgagttgttcgacactgctcatatgagtgttatataggtgtcggacacc 15131843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 15850557 - 15850496
Alignment:
Q  96 agatatcgtagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttata 157  Q
    |||||||  |||||||||| |||||||||||| || |||||||||||| |||||||||||||    
T  15850557 agatatcacagtatttgacatttatttattcatctactatcaaaaaagctaaaaatgttata 15850496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 18393644 - 18393572
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatata 176  Q
    ||||||||||||||||||||| || || ||||||||||| ||||||| ||| |||||| || |||||| ||||    
T  18393644 tagtatttgacctttatttatccatctactatcaaaaaatttaaaaacgttgtaatcaactttaatgtctata 18393572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 31772664 - 31772712
Alignment:
Q  273 tgagttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    ||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  31772664 tgagttgtccgacacgtctcgtatgagtgttatataggtatcggacacc 31772712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 321
Target Start/End: Original strand, 28421288 - 28421326
Alignment:
Q  283 gacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  28421288 gacacagctcgtatgagtgttatataggtgtcggacacc 28421326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 37855229 - 37855276
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatcaaaaaagttaaaaat 151  Q
    |||||||| ||||||||||||||| || |||||||||| |||||||||    
T  37855229 tagtatttaacctttatttattcatctactatcaaaaaggttaaaaat 37855276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 70089 - 70040
Alignment:
Q  180 cctctaattgatcaacatttttcaaaacatatgtaactcttgtatctacg 229  Q
    |||||||||||||||||||| |||| |||||||||| |||||||||||||    
T  70089 cctctaattgatcaacatttctcaacacatatgtaattcttgtatctacg 70040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 289060 - 289106
Alignment:
Q  275 agttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 321  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||    
T  289060 agttgtctgatatgtctcgtatgagtgttatataggtgtcggacacc 289106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 12947 - 13051
Alignment:
Q  104 tagtatttgacctttatttattcaactcctatcaaaaaagttaaaaatgttataatcagctgtaatgtatatattacct-ctaattgatcaacatttttc 202  Q
    ||||||||||| |||||||||||| || |||||||||||| ||||||  || |||||| || |||| | ||||  |||| ||||||||||||| ||| ||    
T  12947 tagtatttgacatttatttattcatctactatcaaaaaagctaaaaacattgtaatcaactttaatttctata--acctcctaattgatcaacgtttctc 13044  T
Q  203 aaaacat 209  Q
    || ||||    
T  13045 aacacat 13051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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