View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18359_low_26 (Length: 296)

Name: NF18359_low_26
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18359_low_26
NF18359_low_26
[»] chr3 (3 HSPs)
chr3 (1-243)||(52609853-52610095)
chr3 (143-242)||(11761752-11761851)
chr3 (176-243)||(3794861-3794928)
[»] chr8 (6 HSPs)
chr8 (1-243)||(34906221-34906446)
chr8 (37-206)||(23473679-23473848)
chr8 (1-187)||(23483028-23483208)
chr8 (140-216)||(23483112-23483188)
chr8 (168-215)||(23473761-23473808)
chr8 (177-235)||(23483238-23483296)
[»] chr5 (3 HSPs)
chr5 (1-187)||(11235711-11235891)
chr5 (177-243)||(11235619-11235685)
chr5 (140-205)||(11235742-11235807)
[»] chr6 (2 HSPs)
chr6 (66-157)||(34960317-34960408)
chr6 (140-222)||(34960342-34960424)
[»] chr2 (1 HSPs)
chr2 (140-210)||(23883310-23883381)
[»] chr4 (1 HSPs)
chr4 (140-181)||(43389915-43389956)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 52610095 - 52609853
Alignment:
Q  1 gaaaatatgaagtggcttttgttctttctttcttttaattaaatggagggaaatgttggagccaagtgaaaatagtggtatatggggaaaatgaaattca 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  52610095 gaaaatatgaagtcgcttttgttctttctttcttttaattaaatggagggaaatgttggagccaagtgaaaatattggtataagaggaaaatgaaattca 52609996  T
Q  101 actattttggcatgagaaggaaagtaaaattggatggagatgaaatttgattattttgtcattagagggaaagtggaattggagggaaatgaaatttgat 200  Q
    | ||||||||||| ||| ||||||| |||||||| ||||||||||||| ||||||||| ||| |||||| ||||| ||||||||||| ||||||||||||    
T  52609995 attattttggcataagagggaaagtcaaattggagggagatgaaatttcattattttgacataagaggggaagtgaaattggagggagatgaaatttgat 52609896  T
Q  201 tattttggcaaaagagaaaaaggaaaagtgagtaatatgattc 243  Q
    |||||||||| || ||||||||||||| |||||||||||||||    
T  52609895 tattttggcacaaaagaaaaaggaaaattgagtaatatgattc 52609853  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 11761752 - 11761851
Alignment:
Q  143 aaatttgattattttgtcattagagggaaagtggaattggagggaaatgaaatttgattattttggcaaaagagaaaaaggaaaagtgagtaatatgatt 242  Q
    |||||||||||||||| ||| | ||  |||||| ||||||||||| || |||||||||||| |||||| ||||| |||||| ||| || |||| ||||||    
T  11761752 aaatttgattattttgacataaaagaaaaagtgaaattggagggagataaaatttgattatgttggcataagaggaaaagggaaattgtgtaacatgatt 11761851  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 3794861 - 3794928
Alignment:
Q  176 gaattggagggaaatgaaatttgattattttggcaaaagagaaaaaggaaaagtgagtaatatgattc 243  Q
    |||||||||||| ||||||||||||||| || ||| |||||  ||||  ||| |||||||||||||||    
T  3794861 gaattggagggatatgaaatttgattatcttagcataagagggaaagtgaaattgagtaatatgattc 3794928  T

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Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 34906221 - 34906446
Alignment:
Q  1 gaaaatatgaagtggcttttgttctttctttcttttaattaaatggagggaaatgttggagccaagtgaaaatagtggtatatggggaaaatgaaattca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||    
T  34906221 gaaaatatgaagtgacttttgttctttctttcttttaattaaatggagggaaatgttggagccaagtggaaatagtggtataagaggaaaatgaaattca 34906320  T
Q  101 actattttggcatgagaaggaaagtaaaattggatggagatgaaatttgattattttgtcattagagggaaagtggaattggagggaaatgaaatttgat 200  Q
    ||||||||||||||||| | ||||| |||||||| ||||||||||||| ||||||||| ||| |                 |||||||||||||||||||    
T  34906321 actattttggcatgagaggaaaagtgaaattggagggagatgaaattttattattttgacataa-----------------gagggaaatgaaatttgat 34906403  T
Q  201 tattttggcaaaagagaaaaaggaaaagtgagtaatatgattc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34906404 tattttggcaaaagagaaaaaggaaaagtgagtaatatgattc 34906446  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 23473679 - 23473848
Alignment:
Q  37 aattaaatggagggaaatgttggagccaagtgaaaatagtggtatatggggaaaatgaaattcaactattttgg-catgagaaggaaagtaaaattggat 135  Q
    |||||||||| || |||||||||||||||||||||||||| ||| | | || || |||||||||| |||||||| ||| | ||||||||| ||||||||     
T  23473679 aattaaatgg-ggaaaatgttggagccaagtgaaaatagtagtacaagagggaagtgaaattcaattattttggtcataaaaaggaaagtgaaattggag 23473777  T
Q  136 ggagatgaaatttgattattttgtcattagagggaaagtggaattggagggaaatgaaatttgattatttt 206  Q
    |||||||||||| |||||||||| ||| ||| |||||||| ||||||||||| |||| |||||||||||||    
T  23473778 ggagatgaaattcgattattttggcataagaaggaaagtgaaattggagggagatgacatttgattatttt 23473848  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 23483028 - 23483208
Alignment:
Q  1 gaaaatatgaagtggcttttgttctttctttctttta------attaaatggagggaaatgttggagccaagtgaaaatagtggtatatggggaaaatga 94  Q
    |||||||||||||||||||| ||||||||||||||||      ||||||||||||||||            |||||| ||||| | || | |||||||||    
T  23483028 gaaaatatgaagtggcttttattctttctttcttttacttaaaattaaatggagggaaa------------gtgaaattagtgttgtaagaggaaaatga 23483115  T
Q  95 aattcaactattttggcatgagaaggaaagtaaaattggatggagatgaaatttgattattttgtcattagagggaaagtggaattggaggga 187  Q
    ||||||| ||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||  ||| |||||||||||| |||||||||||    
T  23483116 aattcaattattttggcataagagggaaagtgaaattggagggagatgaaatttgattattttagcataagagggaaagtgaaattggaggga 23483208  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 23483112 - 23483188
Alignment:
Q  140 atgaaatttgattattttgtcattagagggaaagtggaattggagggaaatgaaatttgattattttggcaaaagag 216  Q
    ||||||||  ||||||||| ||| |||||||||||| ||||||||||| |||||||||||||||||| ||| |||||    
T  23483112 atgaaattcaattattttggcataagagggaaagtgaaattggagggagatgaaatttgattattttagcataagag 23483188  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 23473761 - 23473808
Alignment:
Q  168 ggaaagtggaattggagggaaatgaaatttgattattttggcaaaaga 215  Q
    |||||||| ||||||||||| |||||||| ||||||||||||| ||||    
T  23473761 ggaaagtgaaattggagggagatgaaattcgattattttggcataaga 23473808  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 23483238 - 23483296
Alignment:
Q  177 aattggagggaaatgaaatttgattattttggcaaaagagaaaaaggaaaagtgagtaa 235  Q
    ||||||||||| |||||||||||||||||| ||| | ||  |||||||||| |||||||    
T  23483238 aattggagggagatgaaatttgattatttttgcatatgaagaaaaggaaaattgagtaa 23483296  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 11235891 - 11235711
Alignment:
Q  1 gaaaatatgaagtggcttttgttctttctttctttta------attaaatggagggaaatgttggagccaagtgaaaatagtggtatatggggaaaatga 94  Q
    |||||||||||||||||||| ||||||||||||||||      ||||||||||||||||            ||||||  ||||||||| | |||||||||    
T  11235891 gaaaatatgaagtggcttttattctttctttcttttacttaaaattaaatggagggaaa------------gtgaaatcagtggtataagaggaaaatga 11235804  T
Q  95 aattcaactattttggcatgagaaggaaagtaaaattggatggagatgaaatttgattattttgtcattagagggaaagtggaattggaggga 187  Q
    ||||||| |||||||| || ||| | |||||||||||||| ||||||||||||||||||||| |  || |||||||||||| |||||||||||    
T  11235803 aattcaattattttggtataagaggaaaagtaaaattggagggagatgaaatttgattatttcggtataagagggaaagtgaaattggaggga 11235711  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 11235685 - 11235619
Alignment:
Q  177 aattggagggaaatgaaatttgattattttggcaaaagagaaaaaggaaaagtgagtaatatgattc 243  Q
    ||||||||||| |||||||||||||||||| ||| ||||| |||||||||| |||||| ||||||||    
T  11235685 aattggagggagatgaaatttgattattttcgcacaagaggaaaaggaaaattgagtagtatgattc 11235619  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 11235807 - 11235742
Alignment:
Q  140 atgaaatttgattattttgtcattagagggaaagtggaattggagggaaatgaaatttgattattt 205  Q
    ||||||||  |||||||||  || ||||| |||||  ||||||||||| |||||||||||||||||    
T  11235807 atgaaattcaattattttggtataagaggaaaagtaaaattggagggagatgaaatttgattattt 11235742  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 34960317 - 34960408
Alignment:
Q  66 gtgaaaatagtggtatatggggaaaatgaaattcaactattttggcatgagaaggaaagtaaaattggatggagatgaaatttgattatttt 157  Q
    ||||||||||||| ||| | || |||||||||| || ||||||| ||| ||| ||||||| |||||| | ||||||||||||||||||||||    
T  34960317 gtgaaaatagtggcataagagggaaatgaaatttaattattttgacataagagggaaagtgaaattgaaaggagatgaaatttgattatttt 34960408  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 34960342 - 34960424
Alignment:
Q  140 atgaaatttgattattttgtcattagagggaaagtggaattggagggaaatgaaatttgattattttggcaaaagagaaaaag 222  Q
    ||||||||| ||||||||| ||| |||||||||||| ||||| | ||| |||||||||||||||||| ||| ||||| |||||    
T  34960342 atgaaatttaattattttgacataagagggaaagtgaaattgaaaggagatgaaatttgattattttagcataagaggaaaag 34960424  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 23883310 - 23883381
Alignment:
Q  140 atgaaatttgattattttgtcattagagggaaagtggaattgga-gggaaatgaaatttgattattttggca 210  Q
    |||||||||||||||||||  ||||||||||||||  ||| | | |||||||||||||| ||||||||||||    
T  23883310 atgaaatttgattattttgatattagagggaaagtaaaatagaacgggaaatgaaatttaattattttggca 23883381  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 43389915 - 43389956
Alignment:
Q  140 atgaaatttgattattttgtcattagagggaaagtggaattg 181  Q
    ||||||||||||||||||  |||||||||||||||| |||||    
T  43389915 atgaaatttgattattttagcattagagggaaagtgaaattg 43389956  T

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