View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_low_30 (Length: 265)
Name: NF18359_low_30
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 2095014 - 2094789
Alignment:
| Q |
14 |
catcatcaacgttattgtatttttcctgtatgctattcaataaagtatgttaaatctttctctcaacgttaacccgtttaaccaaggctcctttcnnnnn |
113 |
Q |
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| T |
2095014 |
catcatcaacgttattgtatttttccggtatgctattcaataaagtatgttaaatctttctctcaacgttaacccgtttaaccaaggctcctttcaaaaa |
2094915 |
T |
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| Q |
114 |
nnnnnngtgtccctaccaatcccaccttcatccttaaactaatgaaaaccaatttaaggaatgatccactaaccctttatttaaactccaaatatctccc |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2094914 |
aaa---gtgtccctaccatccccaccttcatccttaaactaatgaaaaccaatttaaggaatgatccactaaccctttatttaaactccaaatatct-cc |
2094819 |
T |
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| Q |
214 |
caagtaaccccatatttgtcttgaaggact |
243 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
2094818 |
caagtatccccatatttgtcttgaaggact |
2094789 |
T |
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