View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_low_31 (Length: 262)
Name: NF18359_low_31
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 26191068 - 26190826
Alignment:
| Q |
18 |
aagtgtgggtgcactttatatcagtctcgagttgcaagatcggcggagtggtttcttata-------actatataggtacttgtaagattaaaaatatta |
110 |
Q |
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| T |
26191068 |
aagtgtgggtgcactttatatcagtctcgagttgtaagatcggcggagtggtttcttatatcaattaactatataggtacttgtaagattaaaaatatta |
26190969 |
T |
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| Q |
111 |
accaatgatttttggtgaagacattaatgaaaatgctattgttctgtttctttcagtcgatcagttctttaagattatttcttacaatgttgtcataaaa |
210 |
Q |
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| T |
26190968 |
accattgatttttggtgaagacattaatgaaaatgctattgttctgtttctttcagtcgatcagttctttaagattatttcttacaatgttgtcgtaaaa |
26190869 |
T |
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| Q |
211 |
caaaaatttgtgaaattaatagatatatgtcactgacctatgc |
253 |
Q |
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| T |
26190868 |
caaaaatttgtgaaattaatagatatatgtcactgacctatgc |
26190826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 16298793 - 16298905
Alignment:
| Q |
140 |
aaaatgctattgttctgtttctttcagtcgatcagttctttaagattatttcttacaatgttgtcataaaacaaaaatttgtgaaattaatagatatatg |
239 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
16298793 |
aaaatgctattgttctgtttctttcagtcaataagttctttaagattatttcttacaatgttgtcattaaacaaaaatttgtgaaattaatagatacatg |
16298892 |
T |
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| Q |
240 |
tcactgacctatg |
252 |
Q |
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|||| ||| |||| |
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| T |
16298893 |
tcaccgacttatg |
16298905 |
T |
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