View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18359_low_34 (Length: 250)

Name: NF18359_low_34
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18359_low_34
NF18359_low_34
[»] chr3 (8 HSPs)
chr3 (17-175)||(52223798-52223959)
chr3 (173-232)||(52226055-52226114)
chr3 (173-232)||(52867553-52867612)
chr3 (173-219)||(42497754-42497800)
chr3 (173-219)||(46318112-46318158)
chr3 (173-219)||(51990202-51990248)
chr3 (174-219)||(40932334-40932379)
chr3 (179-227)||(2812675-2812723)
[»] chr6 (3 HSPs)
chr6 (176-224)||(32650718-32650766)
chr6 (173-219)||(29413401-29413447)
chr6 (176-232)||(5682268-5682324)
[»] chr8 (7 HSPs)
chr8 (173-228)||(32100297-32100352)
chr8 (176-224)||(40552554-40552602)
chr8 (173-219)||(36590916-36590962)
chr8 (179-223)||(17756678-17756722)
chr8 (179-223)||(17765665-17765709)
chr8 (173-217)||(24666272-24666316)
chr8 (175-227)||(44318890-44318942)
[»] chr5 (6 HSPs)
chr5 (173-224)||(4656990-4657041)
chr5 (173-227)||(9626582-9626636)
chr5 (173-227)||(6350224-6350278)
chr5 (173-227)||(22653387-22653441)
chr5 (173-219)||(36027368-36027414)
chr5 (179-232)||(6279714-6279767)
[»] chr4 (4 HSPs)
chr4 (176-232)||(35842175-35842231)
chr4 (175-224)||(23164185-23164234)
chr4 (179-227)||(11051056-11051104)
chr4 (175-219)||(36485762-36485806)
[»] scaffold0002 (1 HSPs)
scaffold0002 (173-232)||(98495-98554)
[»] chr1 (6 HSPs)
chr1 (172-219)||(7025578-7025625)
chr1 (173-208)||(48355599-48355634)
chr1 (173-227)||(19453158-19453212)
chr1 (176-226)||(36378413-36378463)
chr1 (179-231)||(42964563-42964615)
chr1 (173-217)||(45569537-45569581)
[»] chr7 (3 HSPs)
chr7 (173-219)||(38530555-38530601)
chr7 (173-219)||(49148910-49148956)
chr7 (173-205)||(48621085-48621117)
[»] chr2 (3 HSPs)
chr2 (173-219)||(17501827-17501873)
chr2 (173-219)||(26912277-26912323)
chr2 (173-234)||(7510799-7510860)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 52223798 - 52223959
Alignment:
Q  17 gaagcacggtttggtgaaatgtaaagagaaaacataaagttgcaaaagacatggaaggatg---aaaattttaagacagtggtgcacaccgcaaccccga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||    
T  52223798 gaagcacggtttggtgaaatgtaaagagaaaacataaagttgcaaaagacatggaaagatgatgaaaattttaagacagtggtgcacaccgcaaccccga 52223897  T
Q  114 gagaggatgcaacatgggtgaaattgaatgacaaagtaggaagttgcaaaagacatggaagc 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52223898 gagaggatgcaacatgggtgaaattgaatgacaaagtaggaagttgcaaaagacatggaagc 52223959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 52226055 - 52226114
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatcaactataagctatc 232  Q
    |||||||||||||||||||||||| ||| |||| |||||| |||||| ||||||| ||||    
T  52226055 agctaattgaaccgctaattttaccaaacacttcaagtagcttatcagctataagttatc 52226114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 52867612 - 52867553
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatcaactataagctatc 232  Q
    ||||| |||||||||||||||||| ||| ||||||| ||||| || | ||||||||||||    
T  52867612 agctagttgaaccgctaattttaccaaacactttaactagttgataagctataagctatc 52867553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 42497754 - 42497800
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    |||||||||||||||||||||||  |||||||| |||||| ||||||    
T  42497754 agctaattgaaccgctaattttatcaaatacttcaagtagcttatca 42497800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 46318158 - 46318112
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    |||||||||||||||||||||||| ||| | ||||||||| ||||||    
T  46318158 agctaattgaaccgctaattttaccaaacattttaagtagcttatca 46318112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 51990248 - 51990202
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    |||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  51990248 agctaattgaaccgctaattttaccaaacacttcaagtagcttatca 51990202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 40932379 - 40932334
Alignment:
Q  174 gctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    ||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  40932379 gctaattgaaccgctaattttaccaaacacttcaagtagcttatca 40932334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 2812723 - 2812675
Alignment:
Q  179 ttgaaccgctaattttactaaatactttaagtagtttatcaactataag 227  Q
    |||||||||||||||||| ||| ||||||| ||  ||||||||||||||    
T  2812723 ttgaaccgctaattttaccaaacactttaattatcttatcaactataag 2812675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 32650766 - 32650718
Alignment:
Q  176 taattgaaccgctaattttactaaatactttaagtagtttatcaactat 224  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  32650766 taattgaaccgctaattttaccaaatactttaattagcttatcaactat 32650718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 29413447 - 29413401
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    |||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  29413447 agctaattgaaccgctaattttaccaaacacttcaagtagcttatca 29413401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 5682268 - 5682324
Alignment:
Q  176 taattgaaccgctaattttactaaatactttaagtagtttatcaactataagctatc 232  Q
    ||||||||| ||||||||||  ||| |||| |||||||| |||| ||||||||||||    
T  5682268 taattgaactgctaattttatcaaacacttcaagtagttcatcagctataagctatc 5682324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 32100297 - 32100352
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatcaactataagc 228  Q
    |||||||||||||||||||||||| |||||||| |||||| | ||||| |||||||    
T  32100297 agctaattgaaccgctaattttacgaaatacttcaagtagctcatcaattataagc 32100352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 40552554 - 40552602
Alignment:
Q  176 taattgaaccgctaattttactaaatactttaagtagtttatcaactat 224  Q
    ||||||||||||||||||||||||| |||| |||||| |||||| ||||    
T  40552554 taattgaaccgctaattttactaaacacttcaagtagcttatcagctat 40552602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 36590916 - 36590962
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    |||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  36590916 agctaattgaaccgctaattttaccaaacacttcaagtagcttatca 36590962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 17756678 - 17756722
Alignment:
Q  179 ttgaaccgctaattttactaaatactttaagtagtttatcaacta 223  Q
    ||||| |||||||||||||| | ||||||| ||||||||||||||    
T  17756678 ttgaatcgctaattttactagacactttaattagtttatcaacta 17756722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 17765665 - 17765709
Alignment:
Q  179 ttgaaccgctaattttactaaatactttaagtagtttatcaacta 223  Q
    ||||| |||||||||||||| | ||||||| ||||||||||||||    
T  17765665 ttgaatcgctaattttactagacactttaattagtttatcaacta 17765709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 24666272 - 24666316
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttat 217  Q
    |||||||||||||||||||||||| ||| |||| |||||| ||||    
T  24666272 agctaattgaaccgctaattttaccaaacacttcaagtagcttat 24666316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 44318890 - 44318942
Alignment:
Q  175 ctaattgaaccgctaattttactaaatactttaagtagtttatcaactataag 227  Q
    |||||||||||||||||||||| ||| | ||||| ||| |||||| |||||||    
T  44318890 ctaattgaaccgctaattttaccaaacattttaattagcttatcagctataag 44318942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 4657041 - 4656990
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatcaactat 224  Q
    ||||||||||||||||||||||| |||| |||| || |||||||||||||||    
T  4657041 agctaattgaaccgctaattttattaaacacttcaattagtttatcaactat 4656990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 9626636 - 9626582
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatcaactataag 227  Q
    ||||| |||||||||||||||||| ||| ||||||| |||||||||| |||||||    
T  9626636 agctagttgaaccgctaattttaccaaacactttaattagtttatcagctataag 9626582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 6350224 - 6350278
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatcaactataag 227  Q
    ||||| |||||||||||||||||| ||| ||||||| ||| |||||| |||||||    
T  6350224 agctagttgaaccgctaattttaccaaacactttaattagcttatcagctataag 6350278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 22653387 - 22653441
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatcaactataag 227  Q
    ||||| |||||||||||||||||| ||| |||| || ||| ||||||||||||||    
T  22653387 agctagttgaaccgctaattttaccaaacacttcaactagcttatcaactataag 22653441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 36027414 - 36027368
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    |||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  36027414 agctaattgaaccgctaattttaccaaacacttcaagtagcttatca 36027368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 6279767 - 6279714
Alignment:
Q  179 ttgaaccgctaattttactaaatactttaagtagtttatcaactataagctatc 232  Q
    |||||||||||||||||  ||| |||| || ||| |||||||||||||||||||    
T  6279767 ttgaaccgctaattttatcaaacacttcaactagcttatcaactataagctatc 6279714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 35842231 - 35842175
Alignment:
Q  176 taattgaaccgctaattttactaaatactttaagtagtttatcaactataagctatc 232  Q
    ||||||||||||||||||||  ||| |||| |||||| |||||| ||||||||||||    
T  35842231 taattgaaccgctaattttatcaaacacttcaagtagcttatcagctataagctatc 35842175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 23164185 - 23164234
Alignment:
Q  175 ctaattgaaccgctaattttactaaatactttaagtagtttatcaactat 224  Q
    |||||||||||||||||||||| ||| |||| |||||| |||||| ||||    
T  23164185 ctaattgaaccgctaattttaccaaacacttcaagtagcttatcagctat 23164234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 11051056 - 11051104
Alignment:
Q  179 ttgaaccgctaattttactaaatactttaagtagtttatcaactataag 227  Q
    |||||||||||||||||| ||| |||| || |||||||||| |||||||    
T  11051056 ttgaaccgctaattttaccaaacacttcaactagtttatcagctataag 11051104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 36485806 - 36485762
Alignment:
Q  175 ctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    |||||||||||||||||||||| ||| |||| |||||| ||||||    
T  36485806 ctaattgaaccgctaattttaccaaacacttcaagtagcttatca 36485762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 98554 - 98495
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatcaactataagctatc 232  Q
    ||||| || ||||||||||||||| ||| |||| ||| || |||||||||||||||||||    
T  98554 agctagttaaaccgctaattttaccaaacacttcaagcagcttatcaactataagctatc 98495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 7025578 - 7025625
Alignment:
Q  172 aagctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    ||||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  7025578 aagctaattgaaccgctaattttaccaaacacttcaagtagcttatca 7025625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 48355599 - 48355634
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaa 208  Q
    |||||||||||||||||||||||| |||||||||||    
T  48355599 agctaattgaaccgctaattttaccaaatactttaa 48355634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 19453212 - 19453158
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatcaactataag 227  Q
    ||||| ||||| |||||||||||| | ||||||||| |||||||| |||||||||    
T  19453212 agctagttgaatcgctaattttaccagatactttaattagtttatgaactataag 19453158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 36378463 - 36378413
Alignment:
Q  176 taattgaaccgctaattttactaaatactttaagtagtttatcaactataa 226  Q
    ||||||||||||||||||||| ||| |||| || |||||||||| ||||||    
T  36378463 taattgaaccgctaattttaccaaacacttcaattagtttatcagctataa 36378413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 42964563 - 42964615
Alignment:
Q  179 ttgaaccgctaattttactaaatactttaagtagtttatcaactataagctat 231  Q
    |||||||| ||||||||| ||| || |||| |||||||||| |||||||||||    
T  42964563 ttgaaccgttaattttaccaaacacgttaactagtttatcagctataagctat 42964615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 45569581 - 45569537
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttat 217  Q
    ||||||||||||| |||||||||||||||| || || ||||||||    
T  45569581 agctaattgaaccactaattttactaaatatttcaattagtttat 45569537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 38530601 - 38530555
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    |||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  38530601 agctaattgaaccgctaattttaccaaacacttcaagtagcttatca 38530555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 49148910 - 49148956
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    |||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  49148910 agctaattgaaccgctaattttacaaaacacttcaagtagcttatca 49148956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 48621085 - 48621117
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactt 205  Q
    |||||||||||||||||||||||||||| ||||    
T  48621085 agctaattgaaccgctaattttactaaacactt 48621117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 17501873 - 17501827
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    ||||||||||||| |||||||||||||| |||| ||||| |||||||    
T  17501873 agctaattgaaccactaattttactaaacacttcaagtaatttatca 17501827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 26912277 - 26912323
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatca 219  Q
    |||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  26912277 agctaattgaaccgctaattttaccaaacacttcaagtagcttatca 26912323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 7510860 - 7510799
Alignment:
Q  173 agctaattgaaccgctaattttactaaatactttaagtagtttatcaactataagctatctg 234  Q
    ||||| |||||||||||||||||  ||| ||||||| ||| |||||| |||| |||||||||    
T  7510860 agctagttgaaccgctaattttatcaaacactttaattagcttatcagctatcagctatctg 7510799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University