View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_low_38 (Length: 226)
Name: NF18359_low_38
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_38 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 34906164 - 34905946
Alignment:
| Q |
4 |
accataactttttcatccggcctcctttaaaatccccgccatcaccattgaattcctctcttc---ctctacaaaagccctcaatttatttttagattgg |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |
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| T |
34906164 |
accataactttttcgtccggcctcctttaaaatcccctccatcaccattgaattcctctcttcttcctctacaaaagccatcaatttttttttagattgg |
34906065 |
T |
|
| Q |
101 |
agaagtttaatattcgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcctcatgatgt |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
34906064 |
agaagtttaattttcgagatctcccccttctctcttgtttttcggccaccgtgagttgccattgagaaaaccaaacccaacatattcttcctcatgatgt |
34905965 |
T |
|
| Q |
201 |
cagcaacaaaacccctatg |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
34905964 |
cagcaacaaaacccctatg |
34905946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 23482945 - 23482728
Alignment:
| Q |
4 |
accataactttttcatccggcctcctttaaaatccccgccatcaccattgaattcctctcttc---ctctacaaaagccctcaatttatttttagattgg |
100 |
Q |
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|||||||||||| | || ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23482945 |
accataacttttccgtctggcctcctttaaaatccccaccaccaccattgaattcctctcttctttctctacaaaagccctcaatttatttttagattga |
23482846 |
T |
|
| Q |
101 |
agaagtttaatattcgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcctcatgatgt |
200 |
Q |
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| T |
23482845 |
agaagtttaatttttgagatctcccc-ttctctcttgttttccggccaccgtgagttgccattggaaaaaccaaacccaccatattcttcctcatgatgt |
23482747 |
T |
|
| Q |
201 |
cagcaacaaaacccctatg |
219 |
Q |
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||||||||||||||||||| |
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| T |
23482746 |
cagcaacaaaacccctatg |
23482728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 23473449 - 23473237
Alignment:
| Q |
4 |
accataactttttcatccggcctcctttaaaatccccgccatcaccattgaattcctctcttc---ctctacaaaagccctcaatttatttttagattgg |
100 |
Q |
| |
|
||||||||| || | ||||||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23473449 |
accataactattccgtccggcctcctttaaaatccctgccaccaccgttgaattcctctcttcttcctctacaaaagccctcaatttatttttagattgg |
23473350 |
T |
|
| Q |
101 |
agaagtttaatattcgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcctcatgatgt |
200 |
Q |
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||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
23473349 |
agaagtttaatttttgagacttcccccttctctcttgttttccggccactgtgagttgccattgggaaaatcaaacccatcatattcttcctcatgatgt |
23473250 |
T |
|
| Q |
201 |
cagcaacaaaacc |
213 |
Q |
| |
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||||||||||||| |
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| T |
23473249 |
cagcaacaaaacc |
23473237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 11235971 - 11236189
Alignment:
| Q |
4 |
accataactttttcatccggcctcctttaaaatccccgccatcaccattgaattcctctcttc---ctctacaaaagccctcaatttatttttagattgg |
100 |
Q |
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|
|||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11235971 |
accataacttttccgtccggcctcctttaaaatccccaccaccaccattgaattcctctcttctttctctacaaaagccctcaatttatttttagattga |
11236070 |
T |
|
| Q |
101 |
agaagtttaatattcgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcctcatgatgt |
200 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11236071 |
agaagtttaatttttgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcctcgtgatgt |
11236170 |
T |
|
| Q |
201 |
cagcaacaaaacccctatg |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
11236171 |
cagcaacaaaacccctatg |
11236189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 219
Target Start/End: Original strand, 52610173 - 52610389
Alignment:
| Q |
6 |
cataactttttcatccggcctcctttaaaatccccgccatcaccattgaattcctctctt---cctctacaaaagccctcaatttatttttagattggag |
102 |
Q |
| |
|
||||| |||| | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
52610173 |
cataaattttccgtccggcctcctttaaaatccccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaatttatttatagattggag |
52610272 |
T |
|
| Q |
103 |
aagtttaatattcgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcctcatgatgtca |
202 |
Q |
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|
||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
52610273 |
aagtttaatttttgagatctcccccttctttcttgttttccggccaccgtgagttgccatttggaaaaccaaacccaccatattctttctcatgatgtca |
52610372 |
T |
|
| Q |
203 |
gcaacaaaacccctatg |
219 |
Q |
| |
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||||||||||||||||| |
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| T |
52610373 |
gcaacaaaacccctatg |
52610389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 22627909 - 22627862
Alignment:
| Q |
64 |
ttcctctacaaaagccctcaatttatttttagattggagaagtttaat |
111 |
Q |
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|
||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
22627909 |
ttcctctacaaaagcccgcaatttatttctagattggagaagtttaat |
22627862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 3860 - 3814
Alignment:
| Q |
62 |
tcttcctctacaaaagccctcaatttatttttagattggagaagttt |
108 |
Q |
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||||||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
3860 |
tcttcctcttcaaaagccctcaatttatttggagattggaaaagttt |
3814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 22485453 - 22485499
Alignment:
| Q |
62 |
tcttcctctacaaaagccctcaatttatttttagattggagaagttt |
108 |
Q |
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||||||||| ||||||||||||||||||| ||||||||| |||||| |
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| T |
22485453 |
tcttcctcttcaaaagccctcaatttattggtagattggaaaagttt |
22485499 |
T |
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