View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18359_low_39 (Length: 217)
Name: NF18359_low_39
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 38867157 - 38867357
Alignment:
| Q |
1 |
agaacgaaaacaaaactgttgttgaataaggtgcatatagtgaatatgagaagttcctgcttcaatgaatgaaacagaccaaaacattatcaaatcggta |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38867157 |
agaacgaaaacaaaactgtcgttgaataaggtgcatatagtgaatatgtgaagttcctgcttcaatgaatgaaacagaccaaaacattatcaaatcggta |
38867256 |
T |
|
| Q |
101 |
cttttagtaacactcattcaatctcttttcatttgacaattgaataatatgtcaaatgacaattggcaaaaaagaatgcattattgagtcactcagttca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38867257 |
cttttagtaacactaattcaatctcttttcatttgacaattgaataatatgtcaaatgacaattggcaaaaaagaatgcattattgagtcactcagttca |
38867356 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
38867357 |
t |
38867357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 38805892 - 38805692
Alignment:
| Q |
1 |
agaacgaaaacaaaactgttgttgaataaggtgcatatagtgaatatgagaagttcctgcttcaatgaatgaaacagaccaaaacattatcaaatcggta |
100 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
38805892 |
agaacgaaaacaaaactgtcgtcgaataaggtgcatgtagtgagtatgtgaagttcctgcttcaatgaatgaaacagaccaaagcataatcaaatgggta |
38805793 |
T |
|
| Q |
101 |
cttttagtaacactcattcaatctcttttcatttgacaattgaat-aatatgtcaaatgacaattggcaaaaaagaatgcattattgagtcactcagttc |
199 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38805792 |
cttttagtaacactccttcaatcccttttcatttgacaattgaataaatatgtcaaatgacaattggcaaaaaagaatgcactattgagtcactcagttc |
38805693 |
T |
|
| Q |
200 |
a |
200 |
Q |
| |
|
| |
|
|
| T |
38805692 |
a |
38805692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University