View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_low_41 (Length: 203)
Name: NF18359_low_41
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 5469031 - 5469182
Alignment:
| Q |
19 |
atgattttctttgttgaatctccaattctgattttgaattttgatttttctcagaatgctttattagttattgtgcttacaaagtcattgttttgcttta |
118 |
Q |
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| T |
5469031 |
atgattttctttgttgaatctccaattctgattttgaattttgatttttctcagaatgcttta---gttattgtgcttacaaagtcattgttttgcttta |
5469127 |
T |
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| Q |
119 |
tagtataaataaatattttcctatgctttcatgagagaaacaatattatttctta |
173 |
Q |
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| T |
5469128 |
tagtataaagaaatattttcctatgctttcttgagagaaacaatgttatttctta |
5469182 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 14319237 - 14319158
Alignment:
| Q |
55 |
aattttgatttttctcagaatgctttattagttattgtgcttacaaagtcattgttttgctttatagtataaataaatatt |
135 |
Q |
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| T |
14319237 |
aattttgattttcctgagaatgctt-attagttattgtgcttacaaagtcattgttctaatttataggatgaagaaatatt |
14319158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 9590476 - 9590394
Alignment:
| Q |
23 |
ttttctttgttgaatctccaattctgattttgaattttgatttttctcagaatgctttattagttattgtgcttacaaagtcat |
106 |
Q |
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| T |
9590476 |
ttttctttgttgaatccccaattctgattctgaatttggattttttttagaat-atgtattagtcattttgctttcaaagtcat |
9590394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 38572176 - 38572135
Alignment:
| Q |
79 |
ttattagttattgtgcttacaaagtcattgttttgctttata |
120 |
Q |
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| T |
38572176 |
ttattagttattgtacttacaaagtcactgttttgctttata |
38572135 |
T |
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