View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_low_6 (Length: 556)
Name: NF18359_low_6
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 47253211 - 47252849
Alignment:
| Q |
19 |
aagctgttagggagaaatacaagcaacacaaggtgattgttttagcctttctttgttatagttaatatatagctggttcttattattgcaagttgattga |
118 |
Q |
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| T |
47253211 |
aagctgttagggagaaatacaagcaacacaaggtgattgttttagcctttctttgttatagttaatatatagctggttcttattattgcaagttgattga |
47253112 |
T |
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| Q |
119 |
cttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaagagtgacaatctaaatc |
218 |
Q |
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| T |
47253111 |
cttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaagagtgacaatctgaatc |
47253012 |
T |
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| Q |
219 |
agaaatactgtcttaggggttaagtggtgtttggcaatcaacttagttagccttaggcaaaatatgtttggtggcttagatacttgaacctggatctctg |
318 |
Q |
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| T |
47253011 |
agaaatactgtcttaggggttaagtggtgtttggcaatcaacttagttagccttaggcaaaatatgtttggtggcttagatacttgaacctggatctctg |
47252912 |
T |
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| Q |
319 |
tgcatatggttacttaattactcattttgtttggctatctcttttgatgctagtctggtagtg |
381 |
Q |
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| T |
47252911 |
tgcatatggttacttaattactcattttgtttggctatctcttttgatgctagtctggtagtg |
47252849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 377 - 553
Target Start/End: Complemental strand, 47252828 - 47252652
Alignment:
| Q |
377 |
tagtgtttttcaaattttatacatcctattgtcctaggataagtttttagagaaatataaaatgaatagacatacatttgcaacatacaatgtatttttg |
476 |
Q |
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| T |
47252828 |
tagtgtttttcaaattttatacatcctattgtcctaggataagtttttagagaaatataaaatgaatagacatacatttgcaacatacaatgtatttttg |
47252729 |
T |
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| Q |
477 |
aagtgatgaatcaagaataacacacttttgaaacacttgtattcatctacattttatttttcatataaattgatatt |
553 |
Q |
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| T |
47252728 |
aagtgatgaatcaagaataacacacttttgaaacacttgtattcatctacattttatttttcatataaattgatatt |
47252652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 47248337 - 47248227
Alignment:
| Q |
95 |
ttcttattattgcaagttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactt |
194 |
Q |
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| T |
47248337 |
ttcttattattgcaagttcattgacttgaaatcgttttctggaacagttaaaatgtgtggcaaacctgccttcatcgccagagataccaaatcattactt |
47248238 |
T |
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| Q |
195 |
tgtagaagagt |
205 |
Q |
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| T |
47248237 |
tgaaaaagagt |
47248227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 47241961 - 47241780
Alignment:
| Q |
19 |
aagctgttagggagaaatacaagcaacacaaggtgattgttttagcctttc--------tttgttatagttaatatatagctggttcttattattgcaag |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||| |||||||| |||||| |
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| T |
47241961 |
aagctgttagggagaaatacaagcaacaaaaggtgattgttttaacttttaacatttcatttgttatagttaat-----------tcttattaatgcaag |
47241873 |
T |
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| Q |
111 |
ttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaaga |
203 |
Q |
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||| |||||||||| | |||| || |||||||||| ||||||||||||| ||| || ||||| ||||||||| ||||||||| |||||| |
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| T |
47241872 |
ttggttgacttgaactcattgtctggaacagttcaaatatgtggcaaacctccctagctcgccagagataccaaattattactttgaagaaga |
47241780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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