View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_low_7 (Length: 522)
Name: NF18359_low_7
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 16 - 522
Target Start/End: Complemental strand, 54220921 - 54220395
Alignment:
| Q |
16 |
atcaagaggggtgtttcgatcacctttccacccactcgcattccttcaactattgtgtacatggcttgtggaggttttggtgctgcttgtgcagagaata |
115 |
Q |
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| T |
54220921 |
atcaaaaggggtgtttcgatcacctttccacccactcgcattccttcaactattgtgtacatggcttgtggaggttttggtgctgcttgtgcagagaata |
54220822 |
T |
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| Q |
116 |
gaccatttgggttgtcgacaaattcacgcttcctttcctttccgggcggagctcccaccttgaattcatatggctttcaagagtataaagcaggcattca |
215 |
Q |
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| T |
54220821 |
gaccatttgggttgtcgacaaattcacgcttcctttcctttccgggcggagctcccaccttgaattcatatggctttcaagagtataaagcaggcattca |
54220722 |
T |
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| Q |
216 |
tcagcattcaacacgatcacgtaaagcttaaaacaaccaatatgctttcttctagacaagagatcattaaagtatataagaaatatgactttggagatat |
315 |
Q |
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| T |
54220721 |
tcagcattcaacacaatcacgtaaagcttaaaacaaccaatatgctttcttctagacaagagataattaaagtatataagaaatatgactttggagatat |
54220622 |
T |
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| Q |
316 |
aacttaaaatgagattggggtcgggtagctcaactggtttgagctaag---------------aggaccgatgttcaaaccctaatgaaggagaaaataa |
400 |
Q |
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| T |
54220621 |
aacttaaaatgagattggggtcgggtggctcaactggtttgagctaagagttgaagcagttgaaggaccgatgttcaaaccctaatgaaggagaaaatac |
54220522 |
T |
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| Q |
401 |
taact-aaaaactaatataataacattttcctacataagaaactcaaaatgagactatttggcacattattagccgattgatctcatctccctcaag--- |
496 |
Q |
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| T |
54220521 |
taactaaaaaactaatataataacattttcctacataagaaactcaaaatgagactatttggcacattattagccgattgatctcatctccctcaagcac |
54220422 |
T |
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| Q |
497 |
-cacacacagacatgcacagaaaaacc |
522 |
Q |
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| T |
54220421 |
acacacacacacatgcacagaaaaacc |
54220395 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 362
Target Start/End: Original strand, 13607877 - 13607905
Alignment:
| Q |
334 |
ggtcgggtagctcaactggtttgagctaa |
362 |
Q |
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| T |
13607877 |
ggtcgggtagctcaactggtttgagctaa |
13607905 |
T |
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