View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18359_low_8 (Length: 507)

Name: NF18359_low_8
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18359_low_8
NF18359_low_8
[»] chr5 (13 HSPs)
chr5 (22-344)||(4101682-4102022)
chr5 (336-492)||(4101021-4101177)
chr5 (16-239)||(6432105-6432349)
chr5 (24-241)||(5343443-5343681)
chr5 (24-241)||(32747036-32747275)
chr5 (249-394)||(4138504-4138641)
chr5 (94-241)||(1710189-1710335)
chr5 (404-476)||(4109382-4109454)
chr5 (93-241)||(24855705-24855854)
chr5 (16-83)||(1710091-1710159)
chr5 (16-87)||(24855608-24855680)
chr5 (164-234)||(41615886-41615956)
chr5 (406-476)||(4132567-4132637)
[»] chr1 (23 HSPs)
chr1 (16-239)||(6605309-6605549)
chr1 (24-241)||(39598406-39598642)
chr1 (93-241)||(10312966-10313115)
chr1 (16-241)||(12524602-12524847)
chr1 (93-241)||(22334688-22334837)
chr1 (93-240)||(7199269-7199417)
chr1 (97-241)||(14270650-14270794)
chr1 (93-241)||(3475055-3475204)
chr1 (93-215)||(21191137-21191260)
chr1 (93-240)||(18277118-18277265)
chr1 (138-239)||(22817314-22817415)
chr1 (16-87)||(5749603-5749675)
chr1 (24-87)||(4851706-4851769)
chr1 (93-234)||(7564369-7564511)
chr1 (16-87)||(10312868-10312940)
chr1 (24-87)||(7199179-7199242)
chr1 (93-200)||(10223007-10223116)
chr1 (27-87)||(21191286-21191346)
chr1 (24-87)||(3474968-3475031)
chr1 (24-87)||(10222920-10222983)
chr1 (28-87)||(14270826-14270885)
chr1 (97-241)||(29250880-29251019)
chr1 (31-87)||(22334604-22334660)
[»] chr4 (25 HSPs)
chr4 (93-238)||(13721548-13721694)
chr4 (93-240)||(11647907-11648054)
chr4 (101-241)||(53511720-53511861)
chr4 (97-241)||(44108280-44108423)
chr4 (97-241)||(47985479-47985623)
chr4 (93-241)||(55612175-55612324)
chr4 (16-241)||(52919146-52919394)
chr4 (164-241)||(51889303-51889380)
chr4 (93-241)||(53269584-53269731)
chr4 (164-241)||(38990548-38990625)
chr4 (93-236)||(45659315-45659458)
chr4 (24-87)||(13721720-13721783)
chr4 (24-87)||(47985386-47985449)
chr4 (26-87)||(55612089-55612150)
chr4 (24-87)||(38990366-38990429)
chr4 (28-87)||(45659232-45659291)
chr4 (24-87)||(53511896-53511959)
chr4 (183-241)||(17647385-17647443)
chr4 (16-87)||(47604138-47604210)
chr4 (24-87)||(40692681-40692744)
chr4 (24-87)||(40762059-40762122)
chr4 (24-82)||(11648084-11648142)
chr4 (97-241)||(40692773-40692920)
chr4 (24-87)||(44108452-44108515)
chr4 (93-125)||(38990453-38990485)
[»] chr7 (18 HSPs)
chr7 (13-241)||(7255082-7255331)
chr7 (24-241)||(35584765-35585002)
chr7 (24-241)||(38257172-38257408)
chr7 (24-241)||(38264747-38264983)
chr7 (24-239)||(26792191-26792426)
chr7 (93-235)||(43748981-43749127)
chr7 (24-241)||(29331986-29332223)
chr7 (97-241)||(45490413-45490558)
chr7 (93-241)||(108896-109045)
chr7 (24-237)||(24687221-24687455)
chr7 (133-239)||(29739031-29739138)
chr7 (97-239)||(37998865-37999007)
chr7 (24-87)||(33849145-33849208)
chr7 (24-87)||(37999037-37999100)
chr7 (24-87)||(43748894-43748957)
chr7 (25-87)||(15032276-15032338)
chr7 (28-87)||(109069-109128)
chr7 (24-87)||(45490588-45490651)
[»] chr8 (6 HSPs)
chr8 (93-240)||(41834896-41835043)
chr8 (93-241)||(11517-11666)
chr8 (24-241)||(24830950-24831187)
chr8 (97-237)||(42190746-42190885)
chr8 (16-87)||(11420-11492)
chr8 (24-82)||(41835073-41835131)
[»] chr6 (5 HSPs)
chr6 (93-241)||(34949725-34949874)
chr6 (24-241)||(13037082-13037320)
chr6 (93-241)||(480512-480660)
chr6 (24-87)||(480685-480748)
chr6 (90-228)||(12304873-12305012)
[»] chr3 (26 HSPs)
chr3 (101-241)||(41974367-41974508)
chr3 (133-241)||(18876205-18876313)
chr3 (97-241)||(30389110-30389255)
chr3 (93-241)||(48062376-48062529)
chr3 (24-241)||(49327018-49327254)
chr3 (101-239)||(49440067-49440206)
chr3 (93-241)||(8486298-8486448)
chr3 (133-241)||(21449997-21450106)
chr3 (93-241)||(16483052-16483201)
chr3 (97-239)||(44207382-44207526)
chr3 (24-229)||(9127237-9127462)
chr3 (24-229)||(9135344-9135569)
chr3 (24-241)||(47374469-47374706)
chr3 (24-85)||(41974271-41974332)
chr3 (16-87)||(8486201-8486273)
chr3 (24-87)||(48062554-48062617)
chr3 (100-229)||(9119459-9119588)
chr3 (26-87)||(16483226-16483287)
chr3 (157-241)||(45405500-45405584)
chr3 (133-196)||(21979788-21979850)
chr3 (133-196)||(22002219-22002281)
chr3 (24-85)||(53394296-53394356)
chr3 (24-87)||(30389285-30389348)
chr3 (24-87)||(44207287-44207350)
chr3 (160-228)||(3733453-3733521)
chr3 (45-87)||(18876378-18876420)
[»] chr2 (12 HSPs)
chr2 (97-242)||(41961908-41962053)
chr2 (16-241)||(5464076-5464322)
chr2 (93-231)||(15113134-15113274)
chr2 (164-241)||(43334010-43334087)
chr2 (16-81)||(15113038-15113104)
chr2 (93-234)||(16739197-16739342)
chr2 (100-241)||(18963537-18963678)
chr2 (164-234)||(34906536-34906606)
chr2 (95-231)||(5938198-5938335)
chr2 (93-228)||(34948664-34948800)
chr2 (45-87)||(18963709-18963751)
chr2 (160-241)||(45526507-45526588)
[»] scaffold0168 (2 HSPs)
scaffold0168 (97-233)||(12368-12503)
scaffold0168 (24-87)||(12533-12596)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 344
Target Start/End: Complemental strand, 4102022 - 4101682
Alignment:
Q  22 ctactcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag------------------attttgcttctatt 103  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||                    || ||| |||||||    
T  4102022 ctactcgaagaaatcctcttgaaaacaacttcccaaaagattcatcatttctgttattatggtttttttaactgtttatttgttttatgttgtttctatt 4101923  T
Q  104 tatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatccggaatag 203  Q
    ||||||||||| |||||||| |       ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  4101922 tatgttatgtatctttgttccatttttttccaaggcattcacaacaaaaacgatccaaataaagggtctgatgcagtttggactttataatccggaatag 4101823  T
Q  204 cttcatgcattccggattataaaatccggaaaccctcatcataaagtctattctattcattctccaataaagtctacgtgaaatagactgaaattctaaa 303  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4101822 cttcatgcattccggattataaaatccggaaaccctcagcataaagtctattctattcattctccaataaagtcttcgtgaaatagactgaaattctaaa 4101723  T
Q  304 gttattagtggatactggatatcctgtccagcaaaggggag 344  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4101722 gttattagtggatactggatatcctgtccagcaaaggggag 4101682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 336 - 492
Target Start/End: Complemental strand, 4101177 - 4101021
Alignment:
Q  336 aaaggggagaatatgtcgagagcatctcgtagtgagaagaatttgcataatgagggaaacagtggaggtaaataaagatgaaggccggtccgagaatgtg 435  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  4101177 aaaggggagaatatgtcaagagcatctcgtagtgagaagaatttgcataataagggaaacagtg-aggtaaataaagatgaaggccggtccgagaatgtg 4101079  T
Q  436 caaccgaaagtttgtgttcaacacaatagctctattgataaccac-agtaggtctctg 492  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4101078 taaccgaaagtttgtgttcaacacaatagctctattgataaccacaagtaggtctctg 4101021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 6432105 - 6432349
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------attttg 95  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||                     || |||    
T  6432105 caggatctaactcaaagaaatcctcttgaaaacatcttcccaaaagattcatcatttctgttattatggttttttttaactgtttatttgtcttatgttg 6432204  T
Q  96 cttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataat 194  Q
    |||| |||||||||||||||||||||||||       |||||||| | ||||| ||||||| ||||| ||| |||||||||||||||||||| ||| |||    
T  6432205 cttcaatttatgttatgtacctttgttctatttttttccaaggcaattgcaacgaaaacgatccaaacaaaagggtctgatgcagttcggaccttacaat 6432304  T
Q  195 ccggaatagcttcatgcattccggattataaaatccggaaaccct 239  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  6432305 ccggaatagcttcatgcattatggattataaaatccggaaaccct 6432349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 5343443 - 5343681
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------attttgcttctattt 104  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||                     || ||||||| ||||    
T  5343443 actcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttatgttattatggttttttttaactgtttatttgtcttatgttgcttcaattt 5343542  T
Q  105 atgttatgtacctttgttctannnnnnn-ccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaata 202  Q
    |||||||||||||||||||||        |||||||||| ||||| |||||||  |||| ||| |||||||||||||||||||||||| |||||||||||    
T  5343543 atgttatgtacctttgttctattttttttccaaggcatttgcaacgaaaacgattcaaacaaaagggtctgatgcagttcggactttaaaatccggaata 5343642  T
Q  203 gcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  5343643 gcttcatgcattccggattataaaatccgaaaaccctca 5343681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 32747275 - 32747036
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------attttgcttctattt 104  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||                     || ||||||| ||||    
T  32747275 actcaaagaaatcctcttgaaaacactttcccaaaagattcatcatttctgttattatggttttttttaactgtttatttgtcttatgttgcttcaattt 32747176  T
Q  105 atgttatgtacctttgttctannnnnnn--ccaaggcattcgcaacaaaaacgaaccaaa-taaagggtctgatgcagttcggactttataatccggaat 201  Q
    |||||||||||||||||||||         |||||||||| ||||| ||||||| ||||| |||||||||||||| |||||| |||||| ||||||||||    
T  32747175 atgttatgtacctttgttctatttttttttccaaggcatttgcaacgaaaacgatccaaactaaagggtctgatgaagttcgaactttaaaatccggaat 32747076  T
Q  202 agcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  32747075 agcttcatgcattccggattataaaatccgtaaaccctca 32747036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 249 - 394
Target Start/End: Complemental strand, 4138641 - 4138504
Alignment:
Q  249 gtctattctattcattctccaataaagtctacgtgaaatagactgaaattctaaagttattagtggatactggatatcctgtccagcaaaggggagaata 348  Q
    |||||| | |||||||| ||| ||||||||  ||||||||||||||||||||||||||||| || ||||       ||||||||||||||||||||||||    
T  4138641 gtctatacaattcattcccca-taaagtctttgtgaaatagactgaaattctaaagttatttgtagata-------tcctgtccagcaaaggggagaata 4138550  T
Q  349 tgtcgagagcatctcgtagtgagaagaatttgcataatgagggaaa 394  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  4138549 tgtcaagagcatctcgtagtgagaagaatttgcagaatgagggaaa 4138504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 1710189 - 1710335
Alignment:
Q  94 tgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttata 192  Q
    |||||| |||||||||||||||||||||||||       |||||||| | ||||| |||| || ||||| ||| |||| ||||||||||||||||||| |    
T  1710189 tgcttcaatttatgttatgtacctttgttctattttt--ccaaggcaattgcaacgaaaatgatccaaacaaaagggtttgatgcagttcggactttaca 1710286  T
Q  193 atccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1710287 atccggaatagcttcatgcattccggattataaaatccggaaacgctca 1710335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 404 - 476
Target Start/End: Complemental strand, 4109454 - 4109382
Alignment:
Q  404 taaataaagatgaaggccggtccgagaatgtgcaaccgaaagtttgtgttcaacacaatagctctattgataa 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  4109454 taaataaagatgaaggccggtccgagaatgtgcaaccgaaagtttgtgttcaacacaatagcacttttgataa 4109382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 24855705 - 24855854
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||| ||||||||||       || |||||   ||||| ||||||| ||||| ||| ||||||||| ||||||||||||||     
T  24855705 ttgcttcaatttatgttatgtatctttgttctatttttttccgaggcaaatgcaacgaaaacgatccaaacaaaagggtctgatacagttcggactttaa 24855804  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    | ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  24855805 attccggaatagcttcatgcattcccgattataaaattcggaaaccctca 24855854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 1710091 - 1710159
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatgg 83  Q
    ||||||||| |||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||    
T  1710091 caggatctaactcaaagaaatcctcttgaaaacaccttcctaaaagatttatcatttctgttattatgg 1710159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 24855608 - 24855680
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||| |||| ||||||| |||||||||||  ||||||||| ||||||||||| |||||||||||||||    
T  24855608 caggatctaactcacagaaatcttcttgaaaacattttcccaaaagattcatcatttatgttattatggtttt 24855680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 41615886 - 41615956
Alignment:
Q  164 aaagggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaatccggaa 234  Q
    ||||||||||||||||||| ||||||| |||||| || | ||||||||  || ||||||||||||||||||    
T  41615886 aaagggtctgatgcagttcagactttaaaatccgaaacaacttcatgctatcaggattataaaatccggaa 41615956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 476
Target Start/End: Complemental strand, 4132637 - 4132567
Alignment:
Q  406 aataaagatgaaggccggtccgagaatgtgcaaccgaaagtttgtgttcaacacaatagctctattgataa 476  Q
    |||||||| |||| | |||| ||||||||||  ||||||||||||||| |||||||| ||||| |||||||    
T  4132637 aataaagacgaagtcaggtctgagaatgtgcccccgaaagtttgtgttgaacacaatggctcttttgataa 4132567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 6605309 - 6605549
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttaga-----------------ttttgct 97  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| ||||  |                 | |||||    
T  6605309 caggatctaactcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttatgttattatgtttttttaactgtttatttgttttatgttgct 6605408  T
Q  98 tctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatccg 197  Q
    ||||||||||||||||||||||||||||       |||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  6605409 tctatttatgttatgtacctttgttctatttttt-ccaaggcattggcaacgaaaacgatccaaataaagggtctgatgtagttcggactttataatccg 6605507  T
Q  198 gaatagcttcatgcattccggattataaaatccggaaaccct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6605508 gaatagcttcatgcattccggattataaaatccggaaaccct 6605549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 39598642 - 39598406
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------attttgcttctattt 104  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||                     || ||||||| ||||    
T  39598642 actcaaagaaatcctcttgaaaacaccttctcaaaaaattcatcatttctgttattatggttttttttaactgtttatttttctcatgttgcttcaattt 39598543  T
Q  105 atgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaatag 203  Q
    |||||||||||||||||||||       | |||||||| ||||| ||||||| ||||| ||| |||||||||||||||||||||||| ||||||||||||    
T  39598542 atgttatgtacctttgttctatttttttc-aaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgcagttcggactttaaaatccggaatag 39598444  T
Q  204 cttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39598443 cttcatgcattccggattataaaatccggaaaccctca 39598406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 10312966 - 10313115
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||||||||||||||       |||||||||| ||||| ||||||| ||||| ||| |||||||||||||||| |||||||     
T  10312966 ttgcttcaatttatgttatgtacctttgttctatttttttccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgcagttcagactttaa 10313065  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10313066 aatccggaatagcttcatgcattccggattataaaatccggaaaccctca 10313115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 12524602 - 12524847
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaa-attcatcatttctgttattatggttttag------------------attttg 95  Q
    ||||||||| |||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||                    || |||    
T  12524602 caggatctaactcaaagaaatcctcttgaaaactccttcccaaaaagattcatcatttctgttattatggtttttttaactgtttatttgtcttatgttg 12524701  T
Q  96 cttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataat 194  Q
    |||| |||||||||||||||||||||||||       |||||||||| ||||| ||||||| ||||| ||| |||||||||||||||||||||||| |||    
T  12524702 cttcaatttatgttatgtacctttgttctatttttt-ccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgcagttcggactttaaaat 12524800  T
Q  195 ccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  12524801 ccggaatagcttcatgcattccggattataaaatccagaaaccctca 12524847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 22334688 - 22334837
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||||||||||||||       |||||||||| ||||| ||||||| ||||| ||| ||||||||||||||||||||||||     
T  22334688 ttgcttcaatttatgttatgtacctttgttctatttttttccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgcagttcggactttaa 22334787  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||  ||||||||| ||||||| |||||||||||||||||||||||||    
T  22334788 aatccaaaatagcttcttgcattctggattataaaatccggaaaccctca 22334837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 7199269 - 7199417
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaag-ggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||||||||||||||       |||||||||| |||||||||||||  |||| |||  ||||||||||||||| |||||||     
T  7199269 ttgcttcaatttatgttatgtacctttgttctatttttttccaaggcatttgcaacaaaaacgattcaaacaaaatggtctgatgcagttcagactttaa 7199368  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctc 240  Q
    ||| |||||||||||||||||||| |||||||||||| |||||||||||    
T  7199369 aattcggaatagcttcatgcattctggattataaaattcggaaaccctc 7199417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 14270794 - 14270650
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatc 195  Q
    ||||||||||||||||| |||||||||||       |||||||||| ||||| ||||||| ||||| ||| |||||||||||||| | ||||||| ||||    
T  14270794 ttctatttatgttatgtgcctttgttctatttttt-ccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgcagtcctgactttaaaatc 14270696  T
Q  196 cggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  14270695 cggaatagcttcatgcattccggattataacatccggaaaccctca 14270650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 3475055 - 3475204
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaat--aaagggtctgatgcagttcggacttta 190  Q
    ||||||| ||||||||||||||||| |||||||       | |||||||| ||||| ||||||| |||||   ||||||||| |||||||||||||||||    
T  3475055 ttgcttcaatttatgttatgtacctatgttctatttttttc-aaggcatttgcaacgaaaacgatccaaaacaaaagggtcttatgcagttcggacttta 3475153  T
Q  191 taatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3475154 aaatccggaatagcttcatgcattccagattataaaatccggaaaccctca 3475204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 21191260 - 21191137
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnn-ccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttat 191  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||| ||||||| ||| |||||| ||||||||||||||  |||||||    
T  21191260 ttgcttctatttatgttatgtacctttgttctattttttttccaaggcattcgcaacgaaaacgatccatataaagcgtctgatgcagttcaaactttat 21191161  T
Q  192 aatccggaatagcttcatgcattc 215  Q
    |||||| |||||||||||||||||    
T  21191160 aatccgaaatagcttcatgcattc 21191137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 18277265 - 18277118
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    ||||||| ||||||||||||| |||||||||||       |||||||||| || || ||||||| | ||| ||| ||||||||| ||||||||||||||     
T  18277265 ttgcttcaatttatgttatgttcctttgttctatttttt-ccaaggcatttgctacgaaaacgatctaaacaaaagggtctgatacagttcggactttaa 18277167  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctc 240  Q
    ||||||||||||||||||||||||| |||||||||||| | ||||||||    
T  18277166 aatccggaatagcttcatgcattccagattataaaatctgaaaaccctc 18277118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 22817314 - 22817415
Alignment:
Q  138 gcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaatccggaaacc 237  Q
    ||||||| ||| ||||||| |||||||||||| ||||||||||||||| |||| ||||||||  | |||||||| ||||||||||||||||| |||||||    
T  22817314 gcattcgtaacgaaaacgatccaaataaagggcctgatgcagttcggattttacaatccggaccaccttcatgctttccggattataaaatctggaaacc 22817413  T
Q  238 ct 239  Q
    ||    
T  22817414 ct 22817415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 5749603 - 5749675
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||    
T  5749603 caggatctaactcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttatgttattatggtttt 5749675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 4851769 - 4851706
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  4851769 actcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttctgttattatgatttt 4851706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 7564369 - 7564511
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    |||||||| ||||||||||||||||||||||||       ||||| ||||||| |  |||||   ||||||||| ||| |||||| |||||||||||||     
T  7564369 ttgcttctttttatgttatgtacctttgttctatttttttccaagccattcgccaagaaaacactccaaataaaagggcctgatgtagttcggactttaa 7564468  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaa 234  Q
    ||||||||| | |||||||   |||||||||||||||||||||    
T  7564469 aatccggaacaacttcatgttatccggattataaaatccggaa 7564511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 10312868 - 10312940
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| ||||    
T  10312868 caggatctagctcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttatgttattatgttttt 10312940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 7199179 - 7199242
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||||| |||||||||||||||    
T  7199179 actcaaagaaatcctcttgaaaacaccttcccaaacgattcatcatttatgttattatggtttt 7199242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 10223007 - 10223116
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnn-ccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggacttta 190  Q
    ||||||| |||||||||||||||||||||||||        |||||||||| ||||| ||||||| ||||| ||| |||||||||||||||| |||||||    
T  10223007 ttgcttcaatttatgttatgtacctttgttctattttttttccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgcagttcagacttta 10223106  T
Q  191 taatccggaa 200  Q
     |||||||||    
T  10223107 aaatccggaa 10223116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 21191346 - 21191286
Alignment:
Q  27 caaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||    
T  21191346 caaataaatcctcttgaaaataccttcccaaaagattcatcatttctgttattatggtttt 21191286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 3474968 - 3475031
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||||| | |||||||||||    
T  3474968 actcaaagaaatcatcttgaaaacaccttcccaaaagattcatcatttctatcattatggtttt 3475031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 10222920 - 10222983
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||| | |||||| ||||    
T  10222920 actcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttctatcattatgatttt 10222983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 14270885 - 14270826
Alignment:
Q  28 aaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||| |||||| ||| ||||| ||||| |||||||||||||||    
T  14270885 aaagaaatcctcttgaaaacaccttcccgaaagattcaacatttatgttattatggtttt 14270826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 29251019 - 29250880
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatcc 196  Q
    |||||||||||||||||||||||||||||       ||||  ||||||| |||||||||  ||||||| ||||     ||||||| ||| ||||||||||    
T  29251019 ttctatttatgttatgtacctttgttctatttttttccaaaccattcgccacaaaaacgctccaaatacaggg-----tgcagtttggattttataatcc 29250925  T
Q  197 ggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||  | || |||||||| |  | |||||||||||||| ||||||    
T  29250924 ggacaaactccatgcatttcaaaatataaaatccggaacccctca 29250880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 22334604 - 22334660
Alignment:
Q  31 gaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||||||||||| ||||| |||||||||   |||||||| | |||||||||||||||    
T  22334604 gaaatcctcttgtaaacaccttcccaaatgtttcatcatatatgttattatggtttt 22334660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 13721694 - 13721548
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaat-aaagggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||||||||||||||       |||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||     
T  13721694 ttgcttcaatttatgttatgtacctttgttctatttttttccaaggcatttgcaacaaaaacgaaccaaacgaaagggtctgatgcagttcggactttaa 13721595  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccc 238  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  13721594 aatccagaatagcttgatgcattccggattataaaatccggaaaccc 13721548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 11648054 - 11647907
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttata 192  Q
    |||||||| |||||||||||||| |||||||||       ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| |    
T  11648054 ttgcttctttttatgttatgtacttttgttctatttttttccaaggcattctcaacaaaaacgatccaaataaaaggtctgatgcagttcggactttaaa 11647955  T
Q  193 atccggaatagcttcatgcattccggattataaaatccggaaaccctc 240  Q
    ||||||| || |||||||| || |||||||||||||||||||||||||    
T  11647954 atccggactaacttcatgcttttcggattataaaatccggaaaccctc 11647907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 53511861 - 53511720
Alignment:
Q  101 atttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccgga 199  Q
    |||||||||||||||||||||||||       |||||||||| ||||| ||||||| ||||| ||| |||||||||| ||||||||||||| ||||||||    
T  53511861 atttatgttatgtacctttgttctatttttttccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgtagttcggactttaaaatccgga 53511762  T
Q  200 atagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  53511761 atagcttcatgcattccggattataaagtctggaaaccctca 53511720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 44108423 - 44108280
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatcc 196  Q
    ||||||||||||||||||||||||||||        |||||||||||||||| ||||||| ||||| ||||||| |||||| |||| |||||||||||||    
T  44108423 ttctatttatgttatgtacctttgttctgtttttttccaaggcattcgcaacgaaaacgatccaaa-aaagggtttgatgcggttcagactttataatcc 44108325  T
Q  197 ggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||  | ||||||||||||||||||||||||||||||||||||||    
T  44108324 ggaccaccttcatgcattccggattataaaatccggaaaccctca 44108280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 47985479 - 47985623
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaa-taaagggtctgatgcagttcggactttataatc 195  Q
    ||||||||||||||||||| |||||||||       |||||||||| ||||  |||| || |||||  ||||||||||||||||||||||||||| ||||    
T  47985479 ttctatttatgttatgtacatttgttctatttttttccaaggcatttgcaa-gaaaatgatccaaacaaaagggtctgatgcagttcggactttaaaatc 47985577  T
Q  196 cggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  47985578 cggaatagcttcatgcattccggattataaaatccgaaaaccctca 47985623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 55612175 - 55612324
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||||||||||||||        ||||||||| ||||| |||| || ||||| ||| |||||||||| |||||||||||||     
T  55612175 ttgcttcaatttatgttatgtacctttgttctattttttttcaaggcatttgcaacgaaaatgatccaaacaaaagggtctgatgtagttcggactttaa 55612274  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||||||||||||| | |||| |||||    
T  55612275 aatccggaatagcttcatgcattccggattataaaattcagaaatcctca 55612324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 52919146 - 52919394
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------attttg 95  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||                     || |||    
T  52919146 caggatctaactcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttttgttattatggttttttttaactgtttatttgtcttatgttg 52919245  T
Q  96 cttctatttatgttatgtacctttgttctannnnnnn-ccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgc-agttcggactttata 192  Q
    |||| ||||||||||||||| |||||||||        |||||||||| ||||| ||||||| ||||| ||| ||||||||||| |||| |||||||| |    
T  52919246 cttcaatttatgttatgtacttttgttctattttttttccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgctagtttggactttaaa 52919345  T
Q  193 atccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  52919346 atccggaataacttcatgcattccggattataaaatctggaaaccctca 52919394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 51889380 - 51889303
Alignment:
Q  164 aaagggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  51889380 aaagggtctgatgcagttcggactttaaaatctggaatagcttcatgcattccggattataaaatctggaaaccctca 51889303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 53269731 - 53269584
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttata 192  Q
    ||||||||||||||||||||| | |||||||||       |||||||||||||||| ||||||| | |||||||||||||| || |||||  |||||| |    
T  53269731 ttgcttctatttatgttatgttcttttgttctatttttt-ccaaggcattcgcaacgaaaacgatcgaaataaagggtctggtgtagttcaaactttaca 53269633  T
Q  193 atccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||| | ||||  ||||||||||||||||||| ||||    
T  53269632 atccggaatagcttcaaggattcaagattataaaatccggaaactctca 53269584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 38990548 - 38990625
Alignment:
Q  164 aaagggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  38990548 aaagggtctgatgcagttcggactttaaaatccggaataacttcatgcattccggattataaaatctggaaatcctca 38990625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 45659315 - 45659458
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnn-ccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttat 191  Q
    |||||||||||||||||||||||||||||||||        || || |||| ||||| |||||||   ||| ||| ||||||||| ||||| |||||||     
T  45659315 ttgcttctatttatgttatgtacctttgttctattttttttccgagacatttgcaacgaaaacgataaaaa-aaatggtctgatgtagttcagactttac 45659413  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaac 236  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||    
T  45659414 aatccggaatagcttcaagcattccgaattataaaatccggaaac 45659458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 13721783 - 13721720
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||| |||||||||||||||    
T  13721783 actcaaagaaatcctcttgaaaacgccttcccaaaagattcatcatttatgttattatggtttt 13721720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 47985386 - 47985449
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||    
T  47985386 actcaaagaaatcctcttgaaaacaccttcccgaaagattcaacatttctgttattatggtttt 47985449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 55612089 - 55612150
Alignment:
Q  26 tcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| ||||    
T  55612089 tcaaagaaatcctcttgaaaacatcttcccaaaagattcatcatttatgttattatgatttt 55612150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 38990366 - 38990429
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||||||| |||||||||||||||    
T  38990366 actcaaagaaatcctcttgaaaacaccttttcaaaagattcatcatttatgttattatggtttt 38990429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 45659232 - 45659291
Alignment:
Q  28 aaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||    
T  45659232 aaagaaatcctcttgaaaacaacttcccaaaatattcatcatttatgttgttatcgtttt 45659291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 53511959 - 53511896
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||||| |||||| ||| ||||| ||||| |||||||||||||||    
T  53511959 actcaaagaaatcctcttgaaaacaccttcccgaaagattcaacatttttgttattatggtttt 53511896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 17647443 - 17647385
Alignment:
Q  183 ggactttataatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||| | |||||||||    
T  17647443 ggactttataatccggaataacttcatgcattccggactataaaatctgaaaaccctca 17647385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 47604210 - 47604138
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||| |||||||||||||||||||||| | ||||| |||| ||||||||||| |||||||||| ||||    
T  47604210 caggatctaactcaaagaaatcctcttgaaaataccttcctaaaagattcatcatttatgttattatgatttt 47604138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 40692681 - 40692744
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||||||||||||||||||||||||  ||||| ||| ||||| ||||| |||||||||||||||    
T  40692681 actcaaagaaatcctcttgaaaacactttcccgaaagattcaacatttatgttattatggtttt 40692744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 40762059 - 40762122
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||||| |||| |||| |||||    
T  40762059 actcaaagaaatcctcttgaaaacaccttccgaaaagattcatcatttatgtttttattgtttt 40762122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 11648142 - 11648084
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatg 82  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||||||| ||||||||||    
T  11648142 actcaaagaaatcctcttgaaaatacattcccaaaagattcatcatttatgttattatg 11648084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 40692773 - 40692920
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnnc---caaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataa 193  Q
    ||||||||||||||||||||||||||||        |   |||||||||| |||| ||||||| | ||  || ||||||||||  || | ||||||| ||    
T  40692773 ttctatttatgttatgtacctttgttctttttttttctttcaaggcattcacaacgaaaacgatctaataaatgggtctgatgtggtccagactttacaa 40692872  T
Q  194 tccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||  | |||||||||||||||||| ||||||| | |||||||||    
T  40692873 tccggaccaccttcatgcattccggattgtaaaatctgaaaaccctca 40692920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 44108515 - 44108452
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||||||||||||| |||||||||| |||  | ||| ||||| ||||| |||||||||||||||    
T  44108515 actcaaagaaatccccttgaaaacacctttacgaaagattcaacatttatgttattatggtttt 44108452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 38990453 - 38990485
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttcta 125  Q
    ||||||| |||||||||||||||||||||||||    
T  38990453 ttgcttcaatttatgttatgtacctttgttcta 38990485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 7255082 - 7255331
Alignment:
Q  13 catcaggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------att 92  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||                     ||     
T  7255082 catcaggatctaactcaaagaaatcctcttgaaaacatcttcccaaaagattcatcatttctgttattatggttttttttaactgtttatttgtcttatg 7255181  T
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||||||||||||||       ||||| |||| ||||| ||||||| ||||| ||| ||||| ||||||||||| ||||||     
T  7255182 ttgcttcaatttatgttatgtacctttgttctatttttttccaagacatttgcaacgaaaacgatccaaacaaaagggtcagatgcagttcgaactttaa 7255281  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7255282 aatccggaatagcttcatgcattccggattataaaatccggaaatcctca 7255331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 35584765 - 35585002
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------attttgcttctattt 104  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||                     || ||||||| ||||    
T  35584765 actcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttctattattatggttttttttaactgtttatttgtctaatgttgcttcaattt 35584864  T
Q  105 atgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaag-ggtctgatgcagttcggactttataatccggaatag 203  Q
    |||||||||||||||||||||       |||||||||| ||||| ||||||| ||||| |||  ||||||||||||||| ||||||| ||||||||||||    
T  35584865 atgttatgtacctttgttctatttttttccaaggcatttgcaacgaaaacgatccaaacaaaaaggtctgatgcagttcagactttaaaatccggaatag 35584964  T
Q  204 cttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35584965 cttcatgcattccggattataaaatccggaaaccctca 35585002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 38257172 - 38257408
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag------------------attttgcttctattta 105  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||                    || ||||||| |||||    
T  38257172 actcaaagaaatcctcttgaaaacatcttcccaaaagattcatcatttctgttatcatggtttttttaactgtttatttgtcttatgttgcttcaattta 38257271  T
Q  106 tgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaatagc 204  Q
    ||||||||||||||||||||        ||||||||| ||||| ||||||| ||||| ||| |||| |||||||| |||||||||| |||||||||||||    
T  38257272 tgttatgtacctttgttctattttttttcaaggcatttgcaacgaaaacgatccaaacaaaagggtttgatgcaggtcggactttaaaatccggaatagc 38257371  T
Q  205 ttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  38257372 ttcatgcattccggattataaaatccggaaaccctca 38257408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 38264747 - 38264983
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag------------------attttgcttctattta 105  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||                    || ||||||| |||||    
T  38264747 actcaaagaaatcctcttgaaaacatcttcccaaaagattcatcatttctgttatcatggtttttttaactgtttatttgtcttatgttgcttcaattta 38264846  T
Q  106 tgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaatagc 204  Q
    ||||||||||||||||||||        ||||||||| ||||| ||||||| ||||| ||| |||| |||||||| |||||||||| |||||||||||||    
T  38264847 tgttatgtacctttgttctattttttttcaaggcatttgcaacgaaaacgatccaaacaaaagggtttgatgcaggtcggactttaaaatccggaatagc 38264946  T
Q  205 ttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  38264947 ttcatgcattccggattataaaatccggaaaccctca 38264983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 26792426 - 26792191
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------attttgcttctattt 104  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||                     || ||||||| ||||    
T  26792426 actcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttatgttattatggttttttttaactgtttatttgtctcatgttgcttcaattt 26792327  T
Q  105 atgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaatag 203  Q
    |||||||||||||||||||||       |||||||||| ||||| ||||| | ||||| ||| ||||||||| ||||||| |||||| ||||| ||||||    
T  26792326 atgttatgtacctttgttctatttttttccaaggcatttgcaacgaaaacaatccaaacaaaagggtctgatacagttcgtactttaaaatccagaatag 26792227  T
Q  204 cttcatgcattccggattataaaatccggaaaccct 239  Q
    ||||||||||||||||||||||||||||||||||||    
T  26792226 cttcatgcattccggattataaaatccggaaaccct 26792191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 43748981 - 43749127
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnn---ccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactt 188  Q
    ||||||| |||||||||||||||||||||||||          |||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||    
T  43748981 ttgcttcaatttatgttatgtacctttgttctattttttttttccaaggcatttgcaacaaaaacgatccaaataaaagggtctgatgcaattcggactt 43749080  T
Q  189 tataatccggaatagcttcatgcattccggattataaaatccggaaa 235  Q
    || |||| |||||||||||||||||||||||||||||||||||||||    
T  43749081 taaaatctggaatagcttcatgcattccggattataaaatccggaaa 43749127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 29331986 - 29332223
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------attttgcttctattt 104  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||                     || ||||||| ||||    
T  29331986 actcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttctgttattatggttttttttaaccgtttatttgtcttatgttgcttcaattt 29332085  T
Q  105 atgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaatag 203  Q
    |||||||||||||||||||||        ||||||||| ||| | ||||| | ||||| ||| |||||||||  ||||| ||||||| ||||||||||||    
T  29332086 atgttatgtacctttgttctattttttttcaaggcatttgcatcgaaaacaatccaaacaaaagggtctgatatagttcagactttaaaatccggaatag 29332185  T
Q  204 cttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29332186 cttcatgcattccggattataaaatccggaaaccctca 29332223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 45490558 - 45490413
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatc 195  Q
    |||||||||||||||| ||||||||||||       ||||| |||| ||||| |||| || ||||| ||| ||||||||||||||| |||||||| ||||    
T  45490558 ttctatttatgttatgcacctttgttctatttttttccaagacatttgcaacgaaaatgatccaaacaaaagggtctgatgcagtttggactttaaaatc 45490459  T
Q  196 cggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  45490458 cggaatagcttcatgcattccggattataacatccggaaaccctca 45490413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 109045 - 108896
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||||||||||||||       |||||| ||| ||||| ||||||| ||||| ||| |||| |||||||||| ||||||||     
T  109045 ttgcttccatttatgttatgtacctttgttctatttttttccaaggaatttgcaacgaaaacgatccaaacaaaagggtttgatgcagttgggactttaa 108946  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||| | |||||||||||||||||| |||||||||||| |||||||||||    
T  108945 aatctgaaatagcttcatgcattccagattataaaatctggaaaccctca 108896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 24687221 - 24687455
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt-------------------agattttgcttctattt 104  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||                     || ||||||||||||    
T  24687221 actcaaagaaatcctcttgaaaacaccttcccaaaagattcgtcatttctgttattatggttttttttaactgtttatttgtcttatgttgcttctattt 24687320  T
Q  105 atgttatgtacctttgttcta-nnnnnnnccaaggcattcgcaacaaaaacgaaccaaa-taaagggtctgatgcagttcggactttataatccggaata 202  Q
    |||||||||||||||||||||        ||||| || ||||||  ||||||| |||||  |||| ||||| ||||||||||||||||||||||| |  |    
T  24687321 atgttatgtacctttgttctattttttttccaagacaatcgcaatgaaaacgatccaaacaaaagagtctggtgcagttcggactttataatccgaacca 24687420  T
Q  203 gcttcatgcattccggattataaaatccggaaacc 237  Q
     |||||||| || ||||||||||||||||||||||    
T  24687421 ccttcatgcttttcggattataaaatccggaaacc 24687455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 29739031 - 29739138
Alignment:
Q  133 ccaaggcattcgcaacaaaaacgaaccaaataaag-ggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaatccg 231  Q
    |||||||||| ||||| ||||||| ||||| |||  |||||||||||||| |||||||| |||||| |||| |||||||||||| ||||||||||||||     
T  29739031 ccaaggcatttgcaacgaaaacgatccaaacaaaaaggtctgatgcagtttggactttaaaatccgaaatatcttcatgcattctggattataaaatcca 29739130  T
Q  232 gaaaccct 239  Q
    ||||||||    
T  29739131 gaaaccct 29739138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 37999007 - 37998865
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatc 195  Q
    |||||||||||||||||||||||||||||         |||||||||||||| |||||||  |||| ||| ||||||||||| ||||   ||||||||||    
T  37999007 ttctatttatgttatgtacctttgttctatttttttt-aaggcattcgcaacgaaaacgattcaaaaaaaagggtctgatgcggttccatctttataatc 37998909  T
Q  196 cggaatagcttcatgcattccggattataaaatccggaaaccct 239  Q
     |||  | ||||||||||||||||||||||||||| ||||||||    
T  37998908 tggaccaccttcatgcattccggattataaaatccagaaaccct 37998865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 33849208 - 33849145
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||| ||||    
T  33849208 actcaaagaaatcctcttgaaaacacattcccaaaagattcatcatttctgttattatgatttt 33849145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 37999100 - 37999037
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||| ||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||    
T  37999100 actcaaataaatcctcttgaaaacaccttcccaaaagattcaacatttctgttattatggtttt 37999037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 43748894 - 43748957
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||||    
T  43748894 actcaaagaaatcctcttggaaacatcttcccaaaagattcatcatttatgttattatggtttt 43748957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 15032276 - 15032338
Alignment:
Q  25 ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||    
T  15032276 ctcaaagaaatcctcttgaaaacaccttcccaaaagattcattatttatgttattatggtttt 15032338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 109128 - 109069
Alignment:
Q  28 aaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||||||||| |||||||    
T  109128 aaagaaattctcttgaaaacatcttcccaaaagattcatcatttctgttattgtggtttt 109069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 45490651 - 45490588
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||||||||||||||||||||| || |||||| ||| ||||| ||||| |||||||||||||||    
T  45490651 actcaaagaaatcctcttgaaatcatcttcccgaaagattcaacatttatgttattatggtttt 45490588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 41835043 - 41834896
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttata 192  Q
    |||||||| |||||||||||||| |||||||||       ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| |    
T  41835043 ttgcttctttttatgttatgtacttttgttctatttttttccaaggcattctcaacaaaaacgatccaaataaaaggtctgatgcagttcggactttaaa 41834944  T
Q  193 atccggaatagcttcatgcattccggattataaaatccggaaaccctc 240  Q
    ||||||| || |||||||| || |||||||||||||||||||||||||    
T  41834943 atccggactaacttcatgcttttcggattataaaatccggaaaccctc 41834896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 11517 - 11666
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||||||||||||||       ||||| |||| ||||| |||| || ||||| ||| ||||||||||||||||||||||||     
T  11517 ttgcttcaatttatgttatgtacctttgttctatttttttccaagacatttgcaacgaaaatgatccaaacaaaagggtctgatgcagttcggactttaa 11616  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11617 aatccggaatagcttcatgcattccggattataaaatccggaaactctca 11666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 24831187 - 24830950
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------attttgcttctattt 104  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||                     || ||||||| ||||    
T  24831187 actcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttctgttattatggttttttttaactgtttatttgtcttatgttgcttcaattt 24831088  T
Q  105 atgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaatag 203  Q
    |||||||||||||||||| ||       |||||||| | ||||||||||||| ||||| ||| |||||||| |||||||||| |||| ||||||||||||    
T  24831087 atgttatgtacctttgttttatttttttccaaggcaattgcaacaaaaacgatccaaacaaaagggtctgacgcagttcggattttaaaatccggaatag 24830988  T
Q  204 cttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||  |||||||||||| ||||||||||    
T  24830987 cttcatgcattccaaattataaaatccagaaaccctca 24830950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 42190885 - 42190746
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatcc 196  Q
    |||||||||||||||||||||||||||||       |||||||||||||||| ||||||| | ||| ||| ||||| |||| |||  |||||||||||||    
T  42190885 ttctatttatgttatgtacctttgttctatttttt-ccaaggcattcgcaacgaaaacgatctaaaaaaaaggtcttatgcggtttagactttataatcc 42190787  T
Q  197 ggaatagcttcatgcattccggattataaaatccggaaacc 237  Q
    |||  | |||||||||||| |||||||||| ||| ||||||    
T  42190786 ggaccaccttcatgcattctggattataaactccagaaacc 42190746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 11420 - 11492
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||    
T  11420 caggatctaactcaaagaaatcctcttgaaaacatcttcccaaaagattcatcatttatgttattattgtttt 11492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 41835131 - 41835073
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatg 82  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||||||| ||||||||||    
T  41835131 actcaaagaaatcctcttgaaaatacattcccaaaagattcatcatttatgttattatg 41835073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 34949874 - 34949725
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||||||||||||||       |||| ||||| ||||| ||||||| ||||||||| |||||||||||||||| |||||||     
T  34949874 ttgcttcaatttatgttatgtacctttgttctatttttttccaatgcatttgcaacgaaaacgatccaaataaaagggtctgatgcagttcagactttaa 34949775  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  34949774 aatccggaatagcttcatgcattccagattataaaatccagaaaccctca 34949725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 13037320 - 13037082
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt------ag--------------attttgcttctatt 103  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||      ||              || ||||||| |||    
T  13037320 actcaaagaaatcctcttgaaaacaccttctcaaaagattcatcatttctgttattatggtttttttttaagtgtttatttgtcttatgttgcttcaatt 13037221  T
Q  104 tatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaata 202  Q
    ||||||||||||||||||| ||       |||||||||| ||||| |||| || ||||| ||| |||||||||||| ||||||||||| |||||||||||    
T  13037220 tatgttatgtacctttgttttatttttttccaaggcatttgcaacgaaaatgatccaaacaaaagggtctgatgcaattcggactttaaaatccggaata 13037121  T
Q  203 gcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  13037120 gctttatgcattccagattataaaatccggaaaccctca 13037082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 480660 - 480512
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||||||||||||||       | |||||||| ||||| ||||||| ||||| ||| ||||||||||||||||  ||||||     
T  480660 ttgcttcaatttatgttatgtacctttgttctatttttttc-aaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgcagttcaaactttaa 480562  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||| |||||||||||||||||||  |||||||||||||| |||||||||    
T  480561 aatctggaatagcttcatgcattctagattataaaatccgaaaaccctca 480512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 480748 - 480685
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||||| |||||||||||||||    
T  480748 actcaaagaaatcctcttgaaaacacattcccaaaagattcatcatttatgttattatggtttt 480685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 228
Target Start/End: Original strand, 12304873 - 12305012
Alignment:
Q  90 attttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaac-aaaaacgaacca-aataaagggtctgatgcagttcggact 187  Q
    |||||| || ||||||||||||||||||||||| ||       ||||| ||||||| || |||||||| ||| |||| ||||||||||||||||| || |    
T  12304873 attttgtttttatttatgttatgtacctttgttttatttttt-ccaagccattcgccacgaaaaacgatccagaatacagggtctgatgcagttcagatt 12304971  T
Q  188 ttataatccggaatagcttcatgcattccggattataaaat 228  Q
    ||||||||||||    |||||||||||||||| ||||||||    
T  12304972 ttataatccggacagacttcatgcattccggaatataaaat 12305012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 101 - 241
Target Start/End: Original strand, 41974367 - 41974508
Alignment:
Q  101 atttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccgga 199  Q
    |||||||||||||||||||||||||       ||||||||||  |||| ||||||| ||||| ||| |||||||||| ||||||||||||| ||||||||    
T  41974367 atttatgttatgtacctttgttctatttttttccaaggcattttcaacgaaaacgatccaaacaaaagggtctgatgtagttcggactttaaaatccgga 41974466  T
Q  200 atagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41974467 atagcttcatgcattccggattataaaatccggaaaccctca 41974508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 18876313 - 18876205
Alignment:
Q  133 ccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaatccgg 232  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  18876313 ccaaggcattcgcaacaaaaacgatctaaataaagggtctggtgcagctcggactttataattcggaataacttcatgcattccagattataaaatccgg 18876214  T
Q  233 aaaccctca 241  Q
    |||||||||    
T  18876213 aaaccctca 18876205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 30389255 - 30389110
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatc 195  Q
    |||||||||||||||||||||||||||||       |||| ||||| ||||| ||||| | ||||| ||| |||| ||||||||||||||||||| ||||    
T  30389255 ttctatttatgttatgtacctttgttctatttttttccaaagcatttgcaacgaaaacaatccaaacaaaagggtttgatgcagttcggactttaaaatc 30389156  T
Q  196 cggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||    
T  30389155 cagaatagcttcatgcattccagattataaaatccggaaaccctca 30389110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 48062529 - 48062376
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnn----ccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggact 187  Q
    ||||||| |||||||||||||||||||||||||           |||||||||| ||||| ||||||| ||||| ||| |||||||| ||||||| ||||    
T  48062529 ttgcttcaatttatgttatgtacctttgttctattttttttcttccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgaagcagttcagact 48062430  T
Q  188 ttataatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48062429 ttaaaatccggaatagcttcatgcattccggattataaaatccggaaaccctca 48062376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 49327018 - 49327254
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-----------------attttgcttctatttat 106  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||||| |||||||||||||||                   || ||||||| ||||||    
T  49327018 actcaaagaaatcctcttgaaaacacattcccaaaagattcatcatttatgttattatggtttttttaactgtttattttctcatgttgcttcaatttat 49327117  T
Q  107 gttatgtacctttgttctannnnnnncc-aaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaatagc 204  Q
     |||||||||||| |||||       || |||||||| ||||| ||||||| ||||| ||| |||||||||||||||||||||||| ||| |||||||||    
T  49327118 attatgtacctttattctatttttttcccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgcagttcggactttaaaattcggaatagc 49327217  T
Q  205 ttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||||||||||||||||||||| ||||||||||    
T  49327218 ttcatgcattccggattataaaatccagaaaccctca 49327254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 49440067 - 49440206
Alignment:
Q  101 atttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccgga 199  Q
    ||||||||||| ||||||||||| |       |||||||||| ||||| ||||||| ||||| ||| |||||||||||| ||||||||||| ||||||||    
T  49440067 atttatgttatctacctttgttcaatttttttccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgcaattcggactttaaaatccgga 49440166  T
Q  200 atagcttcatgcattccggattataaaatccggaaaccct 239  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  49440167 atagcttcatgcattccggattataaaattcggaaaccct 49440206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 8486298 - 8486448
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnn-ccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggacttta 190  Q
    ||||||| |||||||||||||||||||||||||        |||||||| | ||||| ||||||| ||||| ||| ||||||||||||||||| ||||||    
T  8486298 ttgcttcaatttatgttatgtacctttgttctattttttttccaaggcaattgcaacgaaaacgatccaaacaaaagggtctgatgcagttcgcacttta 8486397  T
Q  191 taatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
     ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  8486398 aaatccggaatagcttcatgcatttcagattataaaatccggaaaccctca 8486448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 21449997 - 21450106
Alignment:
Q  133 ccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaatccg 231  Q
    |||||||||| ||||| ||||||| ||||| ||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  21449997 ccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgcaattcggactttaaaatccggactagcttcatgcattccggattataaaatccg 21450096  T
Q  232 gaaaccctca 241  Q
    ||||||||||    
T  21450097 gaaaccctca 21450106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 16483201 - 16483052
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttat 191  Q
    ||||||| |||||||||||||||||||||||||        ||||||||| ||||| |||| || ||||| ||| |||||||||| |||||||||||||     
T  16483201 ttgcttcaatttatgttatgtacctttgttctattttttttcaaggcatttgcaacgaaaatgatccaaacaaaagggtctgatgtagttcggactttaa 16483102  T
Q  192 aatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||||||||||||| | |||| |||||    
T  16483101 aatccggaatagcttcatgcattccggattataaaattcagaaatcctca 16483052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 44207382 - 44207526
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnn-ccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataat 194  Q
    |||||||||| ||||||||||||||||||        |||||||||| ||||||||||||| ||||| ||| |||| | ||||||||||||||||| |||    
T  44207382 ttctatttatattatgtacctttgttctattttttttccaaggcatttgcaacaaaaacgatccaaacaaaagggtataatgcagttcggactttaaaat 44207481  T
Q  195 ccggaatagcttcatgcattccggattataaaatccggaaaccct 239  Q
    | ||||||||||||||||||| ||||||||||||||| |||||||    
T  44207482 ctggaatagcttcatgcattcaggattataaaatccgaaaaccct 44207526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 9127462 - 9127237
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------attttgcttctattt 104  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||                     || ||||||| ||||    
T  9127462 actcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttctgttattatcgttttttttaactgtttatttatcttatgttgcttcaattt 9127363  T
Q  105 atgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaatag 203  Q
    |||||||||||||||||||||       |||||||| | ||||| ||||||| ||||| ||| ||||||||||||||||  |||||| |||||||||||     
T  9127362 atgttatgtacctttgttctatttttttccaaggcaattgcaacgaaaacgatccaaacaaaagggtctgatgcagttcaaactttacaatccggaataa 9127263  T
Q  204 cttcatgcattccggattataaaatc 229  Q
    ||||| ||||||||||||||||||||    
T  9127262 cttcaagcattccggattataaaatc 9127237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 9135569 - 9135344
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggttttag-------------------attttgcttctattt 104  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||                     || ||||||| ||||    
T  9135569 actcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttctgttattatcgttttttttaactgtttatttatcttatgttgcttcaattt 9135470  T
Q  105 atgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataatccggaatag 203  Q
    |||||||||||||||||||||       |||||||| | ||||| ||||||| ||||| ||| ||||||||||||||||  |||||| |||||||||||     
T  9135469 atgttatgtacctttgttctatttttttccaaggcaattgcaacgaaaacgatccaaacaaaagggtctgatgcagttcaaactttacaatccggaataa 9135370  T
Q  204 cttcatgcattccggattataaaatc 229  Q
    ||||| ||||||||||||||||||||    
T  9135369 cttcaagcattccggattataaaatc 9135344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 47374469 - 47374706
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatgg----ttttag---------------attttgcttctattt 104  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||    |||||                || ||| ||| ||||    
T  47374469 actcaaagaaatcctcttgaaaacaccttcctaaaagattcatcatttctgttattatggctttttttaactgtctatttgtcttatgttgtttcaattt 47374568  T
Q  105 atgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggt-ctgatgcagttcggactttataatccggaatag 203  Q
    ||||| |||||||||||||||       | |||||| |  |||| ||||||| ||||| ||| ||| |||||||||||||||||||| ||||||||||||    
T  47374569 atgttgtgtacctttgttctatttttttctaaggcaattacaacgaaaacgatccaaacaaaaggttctgatgcagttcggactttaaaatccggaatag 47374668  T
Q  204 cttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  47374669 cttcatgcatttcggattataaaatccggaaacgctca 47374706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 41974271 - 41974332
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtt 85  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  41974271 actcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttatgttattatggtt 41974332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 8486201 - 8486273
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||||| |||||||||||||||    
T  8486201 caggatctaactcaaagaaatcctcttgaaaacacattcccaaaagattcatcatttatgttattatggtttt 8486273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 48062617 - 48062554
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||||| |||||||||||||||    
T  48062617 actcaaagaaatcctcttgaaaacactttcccaaaagattcatcatttatgttattatggtttt 48062554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 9119588 - 9119459
Alignment:
Q  100 tatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagg-gtctgatgcagttcggactttataatccgg 198  Q
    ||||||||||||||||||||||||||         |||||| | ||||| ||||||| ||||| ||| | ||||||||||||||  |||||| |||||||    
T  9119588 tatttatgttatgtacctttgttctatttttttt-aaggcaattgcaactaaaacgatccaaacaaaagagtctgatgcagttcaaactttacaatccgg 9119490  T
Q  199 aatagcttcatgcattccggattataaaatc 229  Q
    |||||||||| |||||||| |||||||||||    
T  9119489 aatagcttcaagcattccgaattataaaatc 9119459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 16483287 - 16483226
Alignment:
Q  26 tcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| ||||    
T  16483287 tcaaagaaatcctcttgaaaacatcttcccaaaagattcatcatttatgttattatgatttt 16483226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 45405500 - 45405584
Alignment:
Q  157 accaaataaagggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||| |||||||||||  ||||| | |||||||||||||  | ||||||||||||||||||||| ||||| ||||||||||    
T  45405500 accaaatatagggtctgatgtcgttcgaattttataatccggacaaacttcatgcattccggattatataatccagaaaccctca 45405584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 21979788 - 21979850
Alignment:
Q  133 ccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatcc 196  Q
    |||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  21979788 ccaaggcattcgcaacgaaa-cgatccaaataaagggtctggtgcagttcggactttataatcc 21979850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 22002219 - 22002281
Alignment:
Q  133 ccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatcc 196  Q
    |||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  22002219 ccaaggcattcgcaacgaaa-cgatccaaataaagggtctggtgcagttcggactttataatcc 22002281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 53394356 - 53394296
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtt 85  Q
    ||||||| |||||||||||||| || |||||||||| ||||||||||| |||||||||||||    
T  53394356 actcaaaaaaatcctcttgaaa-caccttcccaaaagattcatcatttatgttattatggtt 53394296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 30389348 - 30389285
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||||| || | | ||| ||||| ||||| |||||||||||||||    
T  30389348 actcaaagaaatcctcttgaaaacacctgcacgaaagattcaacatttatgttattatggtttt 30389285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 44207287 - 44207350
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||||| |||||  ||| ||||| ||||| ||||||| |||||||    
T  44207287 actcaaagaaatcctcttgaaaacaccttcctgaaagattcaacatttatgttattttggtttt 44207350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 3733453 - 3733521
Alignment:
Q  160 aaataaagggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaat 228  Q
    ||||| |||||||||||||||| ||| |||||||||| ||  | | |||||||||||||| ||||||||    
T  3733453 aaatatagggtctgatgcagtttggattttataatccagataaacgtcatgcattccggaatataaaat 3733521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 18876420 - 18876378
Alignment:
Q  45 aacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||| |||||||||| ||||||||||| |||||||||||||||    
T  18876420 aacaccttcccaaaagattcatcatttatgttattatggtttt 18876378  T

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Target: chr2 (Bit Score: 81; Significance: 7e-38; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 97 - 242
Target Start/End: Complemental strand, 41962053 - 41961908
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatcc 196  Q
    |||||||||||||||||||||||||||||       |||||||||||||||| ||||||| ||||| |||||||||||||  |||||||||||| |||||    
T  41962053 ttctatttatgttatgtacctttgttctatttttttccaaggcattcgcaacgaaaacgatccaaaaaaagggtctgatgtggttcggactttacaatcc 41961954  T
Q  197 ggaatagcttcatgcattccggattataaaatccggaaaccctcat 242  Q
    |||  | |||||||||||||||||| || |||||||||||||||||    
T  41961953 ggaccaccttcatgcattccggattttataatccggaaaccctcat 41961908  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 5464076 - 5464322
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggt-------------tttag-------atttt 94  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||             ||||        || ||    
T  5464076 caggatctaactcaaagaaatcctcttgaaaacaccttcccaaaagattcatcatttctgttattatggtttttttttaactgtttatttgtcttatgtt 5464175  T
Q  95 gcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa-gggtctgatgcagttcggactttataa 193  Q
    ||||| || |||||| |||||||||||||||       |||||||||| ||||| ||||||| ||||| ||| |||||||||||||||||||||||| ||    
T  5464176 gcttcaatctatgttgtgtacctttgttctatttttt-ccaaggcatttgcaacgaaaacgatccaaacaaaagggtctgatgcagttcggactttaaaa 5464274  T
Q  194 tccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |  |||||||||||||||||||| ||||||||||||||||||||||||    
T  5464275 tttggaatagcttcatgcattccagattataaaatccggaaaccctca 5464322  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 15113134 - 15113274
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaa--gggtctgatgcagttcggacttta 190  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||| ||||| |||  |||| ||||||||||| |||||||    
T  15113134 ttgcttctatttatgttatgtacctttgttctatttttttccaaggcattcgcaacgaaaacgatccaaaaaaaaagggtatgatgcagttcagacttta 15113233  T
Q  191 taatccggaatagcttcatgcattccggattataaaatccg 231  Q
     ||||||||||||||||| ||||||  ||||||||||||||    
T  15113234 caatccggaatagcttcaagcattctagattataaaatccg 15113274  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 43334087 - 43334010
Alignment:
Q  164 aaagggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  43334087 aaagggtctgatgcagttcggactttaaaatctggaatagcttcatgcattccggattataaaatctggaaaccctca 43334010  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 15113038 - 15113104
Alignment:
Q  16 caggatcta-ctcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattat 81  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  15113038 caggatctaactcaaagaaatcctcttgaaaacaacttctcaaaagattcatcatttttgttattat 15113104  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 16739197 - 16739342
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnn---ccaaggcattcgcaacaaaaacgaaccaaataaagggtc-tgatgcagttcggactt 188  Q
    |||||||||||||||||||||||||||||||||          ||||| ||||||| |  ||||||  ||||||||| || | |||||||||||||||||    
T  16739197 ttgcttctatttatgttatgtacctttgttctattttttttttccaagccattcgccaagaaaacgctccaaataaaaggacctgatgcagttcggactt 16739296  T
Q  189 tataatccggaatagcttcatgcattccggattataaaatccggaa 234  Q
    || ||||||||| | || |||||  |||||||||||||||||||||    
T  16739297 taaaatccggaacaactacatgctatccggattataaaatccggaa 16739342  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 241
Target Start/End: Complemental strand, 18963678 - 18963537
Alignment:
Q  100 tatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatccgga 199  Q
    ||||||||||||| ||||||||| ||       ||||| |||| || || |||| |  ||||||| ||||| |||||||||||||| |||||||||| ||    
T  18963678 tatttatgttatgcacctttgttttatatttttccaagccatttgccacgaaaaggctccaaatacagggtgtgatgcagttcggattttataatccaga 18963579  T
Q  200 atagcttcatgcattccggattataaaatccggaaaccctca 241  Q
      | |||||||||||||||| ||||||||| |||| ||||||    
T  18963578 caaacttcatgcattccggaatataaaatctggaacccctca 18963537  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 34906606 - 34906536
Alignment:
Q  164 aaagggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaatccggaa 234  Q
    |||||| |||||||||||| ||||||| ||||||||| | ||||||||  |||||||||||||||||||||    
T  34906606 aaagggcctgatgcagttcagactttacaatccggaacaacttcatgctatccggattataaaatccggaa 34906536  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 231
Target Start/End: Original strand, 5938198 - 5938335
Alignment:
Q  95 gcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagg-gtctgatgcagttcggactttataa 193  Q
    |||||| |||||||||||| |||||||| ||       ||||| ||||||| |  ||||||  ||||||||| | | |||||||| ||||||||||| ||    
T  5938198 gcttctttttatgttatgttcctttgttttatttttttccaagccattcgccaagaaaacgctccaaataaaagtgcctgatgcaattcggactttaaaa 5938297  T
Q  194 tccggaatagcttcatgcattccggattataaaatccg 231  Q
    | ||||| | ||||||||  ||||||||||||||||||    
T  5938298 ttcggaaaaacttcatgctatccggattataaaatccg 5938335  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 228
Target Start/End: Complemental strand, 34948800 - 34948664
Alignment:
Q  93 ttgcttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagg-gtctgatgcagttcggactttat 191  Q
    |||||||| |||||||| ||| |||||||||||       ||||| ||||||| |  ||||||  ||||||||| | | |||||||| || ||||||||     
T  34948800 ttgcttctttttatgttctgttcctttgttctattttttcccaagccattcgccaagaaaacgctccaaataaaagtgcctgatgcaatttggactttaa 34948701  T
Q  192 aatccggaatagcttcatgcattccggattataaaat 228  Q
    ||||||||| | ||||||||  |||||||||||||||    
T  34948700 aatccggaaaaacttcatgctatccggattataaaat 34948664  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 18963751 - 18963709
Alignment:
Q  45 aacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  18963751 aacaccttcccaaaagattcatcatttctgttattatggtttt 18963709  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 45526588 - 45526507
Alignment:
Q  160 aaataaagggtctgatgcagttcggactttataatccggaatagcttcatgcattccggattataaaatccggaaaccctca 241  Q
    |||||||| | |||||||| |||||| |||| ||||||||  | |||||||   |||||| ||| |||||||||||||||||    
T  45526588 aaataaagagcctgatgcaattcggattttacaatccggaccaccttcatgttgtccggagtatgaaatccggaaaccctca 45526507  T

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Target: scaffold0168 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 97 - 233
Target Start/End: Complemental strand, 12503 - 12368
Alignment:
Q  97 ttctatttatgttatgtacctttgttctannnnnnnccaaggcattcgcaacaaaaacgaaccaaataaagggtctgatgcagttcggactttataatcc 196  Q
    |||||||||||||||||||||||||||||       |||||||||||||||| ||||||| ||||| |||||||||||||| |||| |||||||||||||    
T  12503 ttctatttatgttatgtacctttgttctatttttt-ccaaggcattcgcaacgaaaacgatccaaaaaaagggtctgatgcggttcagactttataatcc 12405  T
Q  197 ggaatagcttcatgcattccggattataaaatccgga 233  Q
    |||  | ||||||||||||||||||||||||||||||    
T  12404 ggatcaccttcatgcattccggattataaaatccgga 12368  T

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Target: scaffold0168; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 12596 - 12533
Alignment:
Q  24 actcaaagaaatcctcttgaaaacaacttcccaaaaaattcatcatttctgttattatggtttt 87  Q
    ||||||||||||||||||||||||| ||| || ||| ||||| ||||| |||||||||||||||    
T  12596 actcaaagaaatcctcttgaaaacacctttccgaaagattcaacatttatgttattatggtttt 12533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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