View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18359_low_9 (Length: 492)
Name: NF18359_low_9
Description: NF18359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18359_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 642066 - 641587
Alignment:
| Q |
1 |
ttagattcataagcaacttcattcgataaactaaggtgtcctcagcgcacaactggagtgactaatccttcgaggtgtttgagattcatttaaggggttg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
642066 |
ttagattcataagcaacttcattcaataaactaaggtgtcctcagcgcataactggagtgactaatccttcgaggtgtttgagattcatttaacgggttg |
641967 |
T |
|
| Q |
101 |
acctctcccctcaaatggtttttatatttgtatttgtgatcttacatggatttttgagcctttgttatatctgtgacactttgctcaagtcaaaagtcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
641966 |
acctctcccctcaaatggtttttatatttgtatttgtgatcttacatggatttttgagcctttgttatatctgtgacactttgatcaagtcaaaagtcat |
641867 |
T |
|
| Q |
201 |
ttgaaaatttgaaaca-attttttatatttgatggaccttttcactgatggaaaaagatgtgtgac--nnnnnnnnngtaggaaagttgaagtgaattgg |
297 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
641866 |
atgaaaatttgaaacactttttttatatttgatggagcttttcactgatggaaaaagatgtgtgactttttttttttgtaggaaagttgaagtgaattgg |
641767 |
T |
|
| Q |
298 |
attgatgtaaaatgcagagatcgcgtaaagctcttcaacaaagaagatctttagagaaggctgcaagtgggcgaaattgtctttataaagtttctctgtc |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
641766 |
attgatgtaaaatgcagagatcgcgtaaagctcttcaacaaagaagatctttagagaaggctgcaagtgggagaaattgtctttataaagtttctctgtc |
641667 |
T |
|
| Q |
398 |
tttggtttttattttgtggggattggttttcctcttcagcttatggataagttgtggcaacggatatggaggtatctttt |
477 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
641666 |
tttggtttttattttgtggggattggttttcctcttcagcttatggataagttgtggcaacggatatggaggtatctttt |
641587 |
T |
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