View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18360_high_3 (Length: 537)
Name: NF18360_high_3
Description: NF18360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18360_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 175 - 521
Target Start/End: Original strand, 36366205 - 36366551
Alignment:
| Q |
175 |
aagtaagcataatttttaattgaagggttatcatttcaaaaatatgagttccagataatatataaaatgttcaagaaattaaggatannnnnnnnaaggt |
274 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
36366205 |
aagtaagcataatttttaattcaagggttatcatttcaaaaatatgagttccagataatatataaaatgttgaagaaattaaggatattttttttaaggt |
36366304 |
T |
|
| Q |
275 |
aagaaattaaggatcattgtcaacgccgtttgagactgtacaagaccttgttctgcatttaatttctctcctacaatgtcagagctgaagcatactnnnn |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36366305 |
aagaaattaaggatcattgtcaacgccgtttgagactgtacaagaccttgttctgcatttaatttctctcctacaatgtcagagctgaagcatactaaaa |
36366404 |
T |
|
| Q |
375 |
nnnttgaaaacggcggtgagagcaatgtgggcttgatttgggaatataaactgctggtttgacaagaaaaatcgatattccagcaattgagacttaattt |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36366405 |
aaattgaaaacggcggtgagagcaatgtgggcttgatttgggaatataaactgctggtttgacaagaaaaatagatattccagcaattgagacttaattt |
36366504 |
T |
|
| Q |
475 |
ggcatatcgaagccatgcaatgcaactagttccaactaccatattat |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36366505 |
ggcatatcgaagccatgcaatgcaactagtaccaactaccatattat |
36366551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 36365875 - 36366025
Alignment:
| Q |
8 |
agagatgaatcgattgaggtagttaaaaatgatttaaaggattagcatctatgggtcgggtcgggggtattaaaccattgacaaaatgcttaagggaaca |
107 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36365875 |
agagattaatcgattgaggtagctaaaaatgatttaaaggattagcatctatgggtcgggtcgggggtattaaaccattgacaaaatgcttaagggaaca |
36365974 |
T |
|
| Q |
108 |
ataataattttacatcatttaatatttattgggctgtgtaactatctagta |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36365975 |
ataataattttacatcatttaatatttattgggctgtgtaactatctagta |
36366025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University